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Streamline installation

See original GitHub issue

In the future we should create a channel for this such that one can conda install -c mpiie snakepipes into a conda environment and that will bring in snakemake as a requirement. Then we can have an setup command within that which can create the workflow environments as needed. This will be after everything else is done in the hackathon and will then allow us to remove module load snakemake/5.1.2 from the scripts.

Issue Analytics

State:
Created 5 years ago
Comments:5 (5 by maintainers)

Top GitHub Comments

1reaction

dpryan79commented, Jun 5, 2018

unless you explicitly installed it then it was pulled in as a dependency.

0reactions

vivekbhrcommented, Jul 3, 2018

We can also have a discussion about whether we need snakediff as separate package at all or simply move all functions under one folder called Rscripts and call it done… My main reason to make it a package was to install all R dependencies through that, but now there’s conda to deal with that…