question-mark
Stuck on an issue?

Lightrun Answers was designed to reduce the constant googling that comes with debugging 3rd party libraries. It collects links to all the places you might be looking at while hunting down a tough bug.

And, if you’re still stuck at the end, we’re happy to hop on a call to see how we can help out.

[BUG] conda version breaking

See original GitHub issue

Edit: If you are seeing issues with the conda version, try updating PySR with conda update pysr. The new version fixes an issue related to automatic updating of Julia packages.


The conda-forge jobs which test conda install -c conda-forge pysr are currently breaking. This is even with repeat attempts: https://github.com/MilesCranmer/PySR/actions/workflows/CI_conda_forge.yml. The error:

ImportError: 
    Required dependencies are not installed or built.  Run the following code in the Python REPL:

I find this strange, since underlying feedstock has not changed in the meantime, and it seems like the julia feedstock hasn’t been updated recently either.

FYI @mkitti @ngam. I will try to look into this a bit later today.

Issue Analytics

  • State:closed
  • Created a year ago
  • Comments:23 (15 by maintainers)

github_iconTop GitHub Comments

2reactions
MilesCranmercommented, Oct 10, 2022

Indeed, with https://github.com/conda-forge/pysr-feedstock/pull/55 merged, the conda builds are now working again: https://github.com/MilesCranmer/PySR/actions/runs/3216137165/jobs/5257733071. The only meaningful difference is that the depot was re-built, and now GPUArraysCore is included.

0reactions
mkitticommented, Oct 11, 2022

Each depot has its own compiled folder. Changing depots means changing precompilation caches.

Read more comments on GitHub >

github_iconTop Results From Across the Web

Troubleshooting — conda 22.11.1.post16+ce4e810c9 ...
Conda works by unpacking the packages in the pkgs directory and then hard-linking them to the environment. Sometimes these get corrupted, breaking all ......
Read more >
python - Conda install and update do not work also solving ...
Some pip installs will roll back a version of a related package, thus breaking other conda-installed packages. In my case the example was...
Read more >
Getting Started with Conda – Introduction to Python for Data ...
often impossible to install different versions of the same software package at the same time; updating software required for one project can often...
Read more >
Common bugs and issues — Anaconda 38.13 documentation
The bug is reported against a too old version of the operating system. It it possible that the code has changed and the...
Read more >
Broken: conda env create -n gatk -f gatkcondaenv.yml
bioconda::pysam=0.15.3 # using older conda-installed versions may result in libcrypto / openssl bugs # pip installs should be avoided, ...
Read more >

github_iconTop Related Medium Post

No results found

github_iconTop Related StackOverflow Question

No results found

github_iconTroubleshoot Live Code

Lightrun enables developers to add logs, metrics and snapshots to live code - no restarts or redeploys required.
Start Free

github_iconTop Related Reddit Thread

No results found

github_iconTop Related Hackernoon Post

No results found

github_iconTop Related Tweet

No results found

github_iconTop Related Dev.to Post

No results found

github_iconTop Related Hashnode Post

No results found