Incorrect number of samples error when loading a Synamps Neuroscan Curry file
See original GitHub issueDescribe the bug
When trying to read the data of a Neuroscan Synamps .dat
file containing a recording with 128 EEG-electrodes, I am presented with the following error:
RuntimeError: Incorrect number of samples (7623792 != 24999876), please report this error to MNE-Python developers
The file loads correctly in Matlab using EEGLAB and the loadcurry plugin. I believe this issue to be different than #8391, since the number of channels looks correct and the reported number of samples is a lot smaller than the actual number of samples.
Steps to reproduce
import mne
mne.io.read_raw_curry('subject_01.dat', preload=True)
I cannot legally share the .dat
data file, but the accompanying metadata files in the same directory can be found here:
.ceo
: https://cloud.vandenkerchove.com/index.php/s/4L8dKCNtCHwwSLw.dap
: https://cloud.vandenkerchove.com/index.php/s/MKKxGZYkK4MYQET.rs3
: https://cloud.vandenkerchove.com/index.php/s/oYBzFA6RMDBAg4b
Expected results
The file loads correctly
Actual results
Leaving device<->head transform as None (no landmarks found)
Reading 0 ... 1748799 = 0.000 ... 1748.799 secs...
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "<decorator-gen-242>", line 24, in read_raw_curry
File "/data/Workspace/PhD/mne-python/mne/io/curry/curry.py", line 470, in read_raw_curry
return RawCurry(fname, preload, verbose)
File "<decorator-gen-243>", line 24, in __init__
File "/data/Workspace/PhD/mne-python/mne/io/curry/curry.py", line 503, in __init__
super(RawCurry, self).__init__(
File "<decorator-gen-179>", line 24, in __init__
File "/data/Workspace/PhD/mne-python/mne/io/base.py", line 254, in __init__
self._preload_data(preload)
File "/data/Workspace/PhD/mne-python/mne/io/base.py", line 534, in _preload_data
self._data = self._read_segment(
File "<decorator-gen-181>", line 24, in _read_segment
File "/data/Workspace/PhD/mne-python/mne/io/base.py", line 419, in _read_segment
_ReadSegmentFileProtector(self)._read_segment_file(
File "/data/Workspace/PhD/mne-python/mne/io/base.py", line 2013, in _read_segment_file
return self.__raw.__class__._read_segment_file(
File "/data/Workspace/PhD/mne-python/mne/io/curry/curry.py", line 533, in _read_segment_file
_read_segments_file(
File "/data/Workspace/PhD/mne-python/mne/io/utils.py", line 222, in _read_segments_file
raise RuntimeError('Incorrect number of samples (%s != %s), '
RuntimeError: Incorrect number of samples (7623792 != 24999876), please report this error to MNE-Python developers
Additional information
Platform: Linux-5.11.11-200.fc33.x86_64-x86_64-with-glibc2.32
Python: 3.9.2 (default, Feb 20 2021, 00:00:00) [GCC 10.2.1 20201125 (Red Hat 10.2.1-9)]
Executable: /data/Workspace/PhD/mne-python/.venv/bin/python
CPU: x86_64: 12 cores
Memory: Unavailable (requires "psutil" package)
mne: 0.23.dev0
numpy: 1.20.2 {blas=openblas, lapack=openblas}
scipy: 1.6.2
matplotlib: Not found
sklearn: Not found
numba: Not found
nibabel: Not found
nilearn: Not found
dipy: Not found
cupy: Not found
pandas: Not found
mayavi: Not found
pyvista: Not found
vtk: Not found
``
Issue Analytics
- State:
- Created 2 years ago
- Comments:9 (5 by maintainers)
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Top GitHub Comments
The
.dat
file contains 830491200 bytes with encoding binary. Here is a version of the file with all bytes overwritten with 0: https://cloud.vandenkerchove.com/index.php/s/XaPobpicDkGQrJf . After inispection, it looks like ignoring the error does not result in missing samples or channels, or corrupted samples or channels, but I might be missing some minor corruption. The number of samples loaded corresponds to the number of samples in the.dap
file.The file links have expired. These should stay active:
.ceo: https://cloud.vandenkerchove.com/index.php/s/sjo5axorkRXjAzq .dap: https://cloud.vandenkerchove.com/index.php/s/ncKgzCc9NWcw4Bq .rs3: https://cloud.vandenkerchove.com/index.php/s/kTjW4Z7daZ3y95n