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MNE.Picks Selection

See original GitHub issue

Hello,

I am trying to select only a few sensors for analysis and then apply AutoReject:

ica_epochs = mne.read_epochs(ica_apply_path +subject+ 'ar'+'-epo.fif')
picks = mne.pick_types(ica_epochs.info, meg=False, eeg=True, stim=False, eog=False,
              selection=['A11', 'A3', 'A4', 'B14', 'B15', 'B4', 'B5', 'B6', 'B7'])
 ar = AutoReject(picks=picks)

Instead of getting the selection of sensors I requested, I get all sensors back:

<Info | 19 non-empty fields
    bads : list | 0 items
    ch_names : list | A1, A2, A3, A4, A5, A6, A7, A8, A9, ...
    chs : list | 64 items (EEG: 64)
    comps : list | 0 items
    custom_ref_applied : bool | True
    dev_head_t : Transform | 3 items
    dig : list | 67 items (3 Cardinal, 64 EEG)
    events : list | 0 items
    file_id : dict | 4 items
    highpass : float | 1.0 Hz
    hpi_meas : list | 0 items
    hpi_results : list | 0 items
    lowpass : float | 100.0 Hz
    meas_date : tuple | 2019-03-29 15:57:19 GMT
    meas_id : dict | 4 items
    nchan : int | 64
    proc_history : list | 0 items
    projs : list | 0 items
    sfreq : float | 256.0 Hz
    acq_pars : NoneType
    acq_stim : NoneType
    ctf_head_t : NoneType
    description : NoneType
    dev_ctf_t : NoneType
    experimenter : NoneType
    gantry_angle : NoneType
    hpi_subsystem : NoneType
    kit_system_id : NoneType
    line_freq : NoneType
    proj_id : NoneType
    proj_name : NoneType
    subject_info : NoneType
    xplotter_layout : NoneType

Any idea why this might be?

Issue Analytics

State:
Created 4 years ago
Comments:10 (5 by maintainers)

Top GitHub Comments

1reaction

agramfortcommented, Jun 17, 2019

I am confused. What is the Info you show at the end? where is it coming from? what you provide picks to AutoReject you limit cleanup to these channels and the rest are left untouched I think.

0reactions

jasmainakcommented, Jun 18, 2019

yes autoreject only limits analysis to the “picks” channels. It does not subselect the epochs object

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