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visualization of autoreject results in MNE

See original GitHub issue

Currently, the autoreject code hacks into MNE by copying the epochs plotting code and adding two parameters. Unfortunately this is a bit unwieldy to maintain on the autoreject side as we’re using a ton of private functions in MNE and duplicating almost 1000 lines of code …

are people open to adding these parameters to epochs.plot in MNE, or alternatively some code to interpret the drop_log in a special way if it starts with the keyword AUTOREJECT. I can make a PR with the existing diff and iterate the API from there if people are okay with this.

Issue Analytics

State:
Created 4 years ago
Reactions:1
Comments:5 (5 by maintainers)

Top GitHub Comments

1reaction

drammockcommented, Sep 4, 2019

no objection from me. I can work on this with you at the upcoming sprint if you want… it may have been my recent changes to the plotting code that caused this in the first place

0reactions

jasmainakcommented, Sep 5, 2019

What does bad_epoch_idx actually do, then? If all it does is change the color, then that would already be handled by the proposed epoch_colors arg.

yep I think so

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