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Issue rendering AlphaFold structures

See original GitHub issue

v2.1.0

If I load an AlphaFold structure as “mmcif” (e.g. https://alphafold.ebi.ac.uk/files/AF-P05067-F1-model_v1.cif), the structure renders but the “cartoon” representation is never applied. Changing to other representations seems to work fine.

    const data = await plugin.builders.data.download(
      { url, isBinary: false },
      {
        state: { isGhost: true },
      }
    );

    const trajectory = await plugin.builders.structure.parseTrajectory(
      data,
      "mmcif"
    );

    return plugin.builders.structure.hierarchy.applyPreset(
      trajectory,
      "default",
      {
        structure: { name: "model", params: {} },
        showUnitcell: false,
        representationPreset: "auto",
      }
    );

Issue Analytics

  • State:closed
  • Created 2 years ago
  • Reactions:1
  • Comments:11 (5 by maintainers)

github_iconTop GitHub Comments

3reactions
xwatkinscommented, Aug 2, 2021

Many thanks @dsehnal , now updated.

3reactions
dsehnalcommented, Jul 27, 2021

I have discussed this with Sameer V. and will have a version working with the current structures later this week or during the next.

Read more comments on GitHub >

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