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1.11.3: pytest is failing
See original GitHub issueJust normal build, install and test cycle used on building package from non-root account:
- “setup.py build”
- “setup.py install --root </install/prefix>”
- "pytest with PYTHONPATH pointing to setearch and sitelib inside </install/prefix>
+ PYTHONPATH=/home/tkloczko/rpmbuild/BUILDROOT/python-jupytext-1.11.3-2.fc35.x86_64/usr/lib64/python3.8/site-packages:/home/tkloczko/rpmbuild/BUILDROOT/python-jupytext-1.11.3-2.fc35.x86_64/usr/lib/python3.8/site-packages
+ /usr/bin/pytest -ra
=========================================================================== test session starts ============================================================================
platform linux -- Python 3.8.11, pytest-6.2.4, py-1.10.0, pluggy-0.13.1
benchmark: 3.4.1 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rootdir: /home/tkloczko/rpmbuild/BUILD/jupytext-1.11.3
plugins: forked-1.3.0, shutil-1.7.0, virtualenv-1.7.0, expect-1.1.0, httpbin-1.0.0, flake8-1.0.7, timeout-1.4.2, betamax-0.8.1, freezegun-0.4.2, case-1.5.3, isort-1.3.0, aspectlib-1.5.2, asyncio-0.15.1, toolbox-0.5, xprocess-0.17.1, aiohttp-0.3.0, checkdocs-2.7.0, mock-3.6.1, rerunfailures-9.1.1, requests-mock-1.9.3, cov-2.12.1, pyfakefs-4.5.0, flaky-3.7.0, hypothesis-6.14.0, benchmark-3.4.1, xdist-2.3.0, pylama-7.7.1, datadir-1.3.1, regressions-2.2.0, cases-3.6.3, Faker-8.10.0
collected 2579 items
. . [ 0%]
tests/test_active_cells.py ............................ [ 1%]
tests/test_auto_ext.py .............................................................x.s....................... [ 4%]
tests/test_black.py ...s........ [ 4%]
tests/test_cell_id.py . [ 5%]
tests/test_cell_metadata.py ............................................................ [ 7%]
tests/test_cells.py ............... [ 7%]
tests/test_changelog.py ... [ 8%]
tests/test_cli.py .................................................................................................................................................. [ 13%]
.................................................................................................................................................................... [ 20%]
F........................................................................................s................ [ 24%]
tests/test_cli_config.py ........... [ 24%]
tests/test_cm_config.py ............ [ 25%]
tests/test_combine.py .................................................. [ 27%]
tests/test_compare.py ..................... [ 27%]
tests/test_config.py ................. [ 28%]
tests/test_contentsmanager.py ...................................................................................................................................... [ 33%]
.................................................................................................................................................................... [ 40%]
................................................................................................................................F................................... [ 46%]
..ss [ 46%]
tests/test_custom_cell_magics.py . [ 46%]
tests/test_doxygen.py .......... [ 46%]
tests/test_escape_magics.py ............................................................................... [ 50%]
tests/test_execute.py ......s. [ 50%]
tests/test_formats.py ......................... [ 51%]
tests/test_header.py .......... [ 51%]
tests/test_hide_remove_input_outputs_rmarkdown.py ........ [ 52%]
tests/test_ipynb_to_R.py .... [ 52%]
tests/test_ipynb_to_myst.py .......ss... [ 52%]
tests/test_ipynb_to_py.py .................... [ 53%]
tests/test_ipynb_to_rmd.py ........................ [ 54%]
tests/test_isort.py . [ 54%]
tests/test_jupytext_errors.py .. [ 54%]
tests/test_jupytext_nbconvert_round_trip.py ....................... [ 55%]
tests/test_jupytext_read.py .. [ 55%]
tests/test_knitr_spin.py . [ 55%]
tests/test_load_multiple.py .. [ 55%]
tests/test_markdown_in_code_cells.py .... [ 55%]
tests/test_metadata_filter.py ................. [ 56%]
tests/test_metadata_filters_from_config.py . [ 56%]
tests/test_mirror.py ............................................................................................................................................... [ 61%]
..................................................................................F................................................................................. [ 68%]
....F................................................................................................... [ 72%]
tests/test_nbformat_version.py ....... [ 72%]
tests/test_paired_paths.py ................... [ 73%]
tests/test_pep8.py ................................................................................................................... [ 77%]
tests/test_pre_commit_0_ipynb_to_py.py E [ 77%]
tests/test_pre_commit_1_sync.py E [ 77%]
tests/test_pre_commit_2_sync_nbstripout.py E [ 77%]
tests/test_pre_commit_3_sync_black_nbstripout.py E [ 77%]
tests/test_pre_commit_4_sync_execute.py s [ 78%]
tests/test_pre_commit_5_reformat_markdown.py E [ 78%]
tests/test_pre_commit_mode.py ............ [ 78%]
tests/test_pre_commit_scripts.py ........ [ 78%]
tests/test_preserve_empty_cells.py ....... [ 79%]
tests/test_pytest.py .. [ 79%]
tests/test_read_all_py.py .......................................................................................................... [ 83%]
tests/test_read_dotnet_try_markdown.py ... [ 83%]
tests/test_read_folding_markers.py ..... [ 83%]
tests/test_read_incomplete_rmd.py ... [ 83%]
tests/test_read_simple_R.py ............ [ 84%]
tests/test_read_simple_clojure.py . [ 84%]
tests/test_read_simple_csharp.py ....... [ 84%]
tests/test_read_simple_groovy.py . [ 84%]
tests/test_read_simple_hydrogen.py ....... [ 84%]
tests/test_read_simple_ipynb.py . [ 84%]
tests/test_read_simple_java.py . [ 84%]
tests/test_read_simple_julia.py . [ 84%]
tests/test_read_simple_markdown.py .................................... [ 86%]
tests/test_read_simple_matlab.py .. [ 86%]
tests/test_read_simple_nomarker.py .. [ 86%]
tests/test_read_simple_pandoc.py ....s [ 86%]
tests/test_read_simple_percent.py ..................... [ 87%]
tests/test_read_simple_python.py ................................................ [ 89%]
tests/test_read_simple_rmd.py ......... [ 89%]
tests/test_read_simple_rust.py ... [ 89%]
tests/test_read_simple_scheme.py . [ 89%]
tests/test_read_simple_sphinx.py ... [ 89%]
tests/test_read_write_functions.py ..... [ 90%]
tests/test_rmd_to_ipynb.py ...... [ 90%]
tests/test_save_multiple.py ..................................................... [ 92%]
tests/test_stringparser.py .... [ 92%]
tests/test_trust_notebook.py ................................................ [ 94%]
tests/test_unicode.py ............................... [ 95%]
tests/test_using_cli.py . [ 95%]
tests/test_write_does_not_modify_notebook.py .............................................................................................................. [100%]
================================================================================== ERRORS ==================================================================================
____________________________________________________________ ERROR at setup of test_pre_commit_hook_ipynb_to_py ____________________________________________________________
jupytext_repo_root = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.3'
@pytest.fixture
def jupytext_repo_rev(jupytext_repo_root):
"""The local revision of this repo, to use in .pre-commit-config.yaml in tests"""
> return system("git", "rev-parse", "HEAD", cwd=jupytext_repo_root).strip()
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.3/tests/conftest.py:50:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
args = ('git', 'rev-parse', 'HEAD'), kwargs = {'cwd': '/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.3', 'stdout': -1}, proc = <subprocess.Popen object at 0x7fb217414d60>
out = b'', _ = None
def system(*args, **kwargs):
"""Execute the given bash command"""
kwargs.setdefault("stdout", subprocess.PIPE)
proc = subprocess.Popen(args, **kwargs)
out, _ = proc.communicate()
if proc.returncode:
> raise SystemExit(proc.returncode)
E SystemExit: 128
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.3/jupytext/cli.py:50: SystemExit
-------------------------------------------------------------------------- Captured stderr setup ---------------------------------------------------------------------------
fatal: not a git repository (or any parent up to mount point /home/tkloczko)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
_______________________________________________________________ ERROR at setup of test_pre_commit_hook_sync ________________________________________________________________
jupytext_repo_root = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.3'
@pytest.fixture
def jupytext_repo_rev(jupytext_repo_root):
"""The local revision of this repo, to use in .pre-commit-config.yaml in tests"""
> return system("git", "rev-parse", "HEAD", cwd=jupytext_repo_root).strip()
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.3/tests/conftest.py:50:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
args = ('git', 'rev-parse', 'HEAD'), kwargs = {'cwd': '/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.3', 'stdout': -1}, proc = <subprocess.Popen object at 0x7fb21741c3a0>
out = b'', _ = None
def system(*args, **kwargs):
"""Execute the given bash command"""
kwargs.setdefault("stdout", subprocess.PIPE)
proc = subprocess.Popen(args, **kwargs)
out, _ = proc.communicate()
if proc.returncode:
> raise SystemExit(proc.returncode)
E SystemExit: 128
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.3/jupytext/cli.py:50: SystemExit
-------------------------------------------------------------------------- Captured stderr setup ---------------------------------------------------------------------------
fatal: not a git repository (or any parent up to mount point /home/tkloczko)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
__________________________________________________________ ERROR at setup of test_pre_commit_hook_sync_nbstripout __________________________________________________________
jupytext_repo_root = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.3'
@pytest.fixture
def jupytext_repo_rev(jupytext_repo_root):
"""The local revision of this repo, to use in .pre-commit-config.yaml in tests"""
> return system("git", "rev-parse", "HEAD", cwd=jupytext_repo_root).strip()
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.3/tests/conftest.py:50:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
args = ('git', 'rev-parse', 'HEAD'), kwargs = {'cwd': '/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.3', 'stdout': -1}, proc = <subprocess.Popen object at 0x7fb217447670>
out = b'', _ = None
def system(*args, **kwargs):
"""Execute the given bash command"""
kwargs.setdefault("stdout", subprocess.PIPE)
proc = subprocess.Popen(args, **kwargs)
out, _ = proc.communicate()
if proc.returncode:
> raise SystemExit(proc.returncode)
E SystemExit: 128
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.3/jupytext/cli.py:50: SystemExit
-------------------------------------------------------------------------- Captured stderr setup ---------------------------------------------------------------------------
fatal: not a git repository (or any parent up to mount point /home/tkloczko)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
_______________________________________________________ ERROR at setup of test_pre_commit_hook_sync_black_nbstripout _______________________________________________________
Issue Analytics
- State:
- Created 2 years ago
- Comments:12 (6 by maintainers)
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Great news! I need to do some research on how to filter out the warnings, so I’ll do that in a separate issue: #823. And thank you for your work on the rpm package (and I’ll release the next version 1.11.4 very soon)
A just FTR … pytest still shows some warnings