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1.11.4: pytest is failing when `pytest-randomly` plugin is used
See original GitHub issueI’m trying to package your module as rpm packag. So I’m using typical in such case build, install and test cycle used on building package from non-root account:
- “setup.py build”
- “setup.py install --root </install/prefix>”
- "pytest with PYTHONPATH pointing to sitearch and sitelib inside </install/prefix>
May I ask for help because few units are failing:
+ PYTHONPATH=/home/tkloczko/rpmbuild/BUILDROOT/python-jupytext-1.11.4-3.fc35.x86_64/usr/lib64/python3.8/site-packages:/home/tkloczko/rpmbuild/BUILDROOT/python-jupytext-1.11.4-3.fc35.x86_64/usr/lib/python3.8/site-packages
+ /usr/bin/pytest -ra
=========================================================================== test session starts ============================================================================
platform linux -- Python 3.8.11, pytest-6.2.4, py-1.10.0, pluggy-0.13.1
benchmark: 3.4.1 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
Using --randomly-seed=3239909864
rootdir: /home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4
plugins: forked-1.3.0, shutil-1.7.0, virtualenv-1.7.0, expect-1.1.0, flake8-1.0.7, timeout-1.4.2, betamax-0.8.1, freezegun-0.4.2, aspectlib-1.5.2, toolbox-0.5, rerunfailures-9.1.1, requests-mock-1.9.3, cov-2.12.1, pyfakefs-4.5.0, flaky-3.7.0, benchmark-3.4.1, xdist-2.3.0, pylama-7.7.1, datadir-1.3.1, regressions-2.2.0, cases-3.6.3, xprocess-0.18.1, black-0.3.12, checkdocs-2.7.1, anyio-3.3.0, Faker-8.11.0, asyncio-0.15.1, trio-0.7.0, httpbin-1.0.0, subtests-0.5.0, isort-2.0.0, hypothesis-6.14.6, mock-3.6.1, profiling-1.7.0, randomly-3.8.0
collected 2585 items
tests/test_knitr_spin.py . [ 0%]
tests/test_read_simple_matlab.py .. [ 0%]
tests/test_read_simple_rmd.py ......... [ 0%]
tests/test_rmd_to_ipynb.py ...... [ 0%]
tests/test_changelog.py ... [ 0%]
tests/test_pre_commit_scripts.py ....s... [ 1%]
tests/test_read_dotnet_try_markdown.py ... [ 1%]
tests/test_read_simple_R.py ............ [ 1%]
tests/test_read_simple_sphinx.py ... [ 1%]
tests/test_read_write_functions.py ..... [ 2%]
tests/test_ipynb_to_myst.py .s........s. [ 2%]
tests/test_save_multiple.py ..................................................... [ 4%]
tests/test_metadata_filter.py ................. [ 5%]
tests/test_read_simple_ipynb.py . [ 5%]
tests/test_ipynb_to_py.py .................... [ 6%]
tests/test_read_simple_markdown.py .................................... [ 7%]
tests/test_read_simple_java.py . [ 7%]
tests/test_config.py ................. [ 8%]
tests/test_preserve_empty_cells.py ....... [ 8%]
tests/test_doxygen.py .......... [ 8%]
tests/test_pre_commit_4_sync_execute.py s [ 8%]
tests/test_isort.py . [ 8%]
tests/test_markdown_in_code_cells.py .... [ 8%]
tests/test_read_simple_groovy.py . [ 9%]
tests/test_cell_id.py . [ 9%]
tests/test_formats.py ................s........ [ 10%]
tests/test_unicode.py ............................... [ 11%]
tests/test_write_does_not_modify_notebook.py .............................................................................................................. [ 15%]
tests/test_cells.py ............... [ 16%]
tests/test_read_simple_clojure.py . [ 16%]
tests/test_header.py .......... [ 16%]
tests/test_nbformat_version.py ....... [ 16%]
tests/test_jupytext_errors.py .. [ 16%]
tests/test_pre_commit_0_ipynb_to_py.py s [ 16%]
tests/test_mirror.py ........s.......s.........ss...s.....................s..........s.....................................s............s.........s........s........ [ 22%]
................s................ss......s.......s............s.........s.............s.......s.............................................s....................... [ 28%]
.............s..s......s..s......s...............s....s...............................s..............s.. [ 32%]
tests/test_execute.py ....s... [ 33%]
tests/test_read_simple_percent.py ...................... [ 33%]
tests/test_jupytext_read.py .. [ 34%]
tests/test_read_folding_markers.py ..... [ 34%]
tests/test_read_simple_nomarker.py .. [ 34%]
tests/test_pre_commit_mode.py ............ [ 34%]
tests/test_pre_commit_5_reformat_markdown.py s [ 34%]
tests/test_read_simple_julia.py . [ 34%]
tests/test_using_cli.py . [ 34%]
tests/test_cell_metadata.py ..........................F.............FF.F....F..F..F..F.. [ 37%]
tests/test_pep8.py ................................................................................................................... [ 41%]
tests/test_ipynb_to_R.py .... [ 41%]
tests/test_read_simple_rust.py ... [ 41%]
tests/test_read_simple_csharp.py ....... [ 42%]
tests/test_read_all_py.py .......................................................................................................... [ 46%]
tests/test_load_multiple.py .. [ 46%]
tests/test_paired_paths.py ...................... [ 47%]
tests/test_hide_remove_input_outputs_rmarkdown.py ........ [ 47%]
tests/test_read_simple_pandoc.py sssss [ 47%]
tests/test_active_cells.py ..................... [ 48%]
. . [ 48%]
tests/test_active_cells.py ....... [ 48%]
tests/test_auto_ext.py .....................................x........................s........................ [ 52%]
tests/test_escape_magics.py ................................................................................ [ 55%]
tests/test_stringparser.py .... [ 55%]
tests/test_read_simple_scheme.py . [ 55%]
tests/test_pytest.py .. [ 55%]
tests/test_ipynb_to_rmd.py ........................ [ 56%]
tests/test_custom_cell_magics.py . [ 56%]
tests/test_cli_config.py ........... [ 56%]
tests/test_black.py ....s........ [ 57%]
tests/test_jupytext_nbconvert_round_trip.py ....................... [ 58%]
tests/test_metadata_filters_from_config.py . [ 58%]
tests/test_compare.py ..................... [ 59%]
tests/test_read_incomplete_rmd.py ... [ 59%]
tests/test_cm_config.py ............ [ 59%]
tests/test_contentsmanager.py .s..s.............................................................s......s......s..................................................... [ 65%]
.....................................s....................................s............s...................s.......s..s...s.....................................s... [ 71%]
..........................................................s....ss...s.......................s................................................s.............s........ [ 77%]
.... [ 77%]
tests/test_pre_commit_2_sync_nbstripout.py s [ 77%]
tests/test_pre_commit_3_sync_black_nbstripout.py s [ 77%]
tests/test_trust_notebook.py ................................................ [ 79%]
tests/test_read_simple_hydrogen.py ....... [ 80%]
tests/test_combine.py .................................................. [ 81%]
tests/test_cli.py ...............s.s.....................s......................................s..........s......................s.......s............s............ [ 87%]
...ss........s................s...................................s.s.........s....s.......s.s........................s.....................s...................s... [ 93%]
........s.........s.................s.......s....................................................s........ [ 98%]
tests/test_read_simple_python.py ................................................ [ 99%]
tests/test_pre_commit_1_sync.py s [100%]
================================================================================= FAILURES =================================================================================
____________________________________________________ test_parse_rmd_options[r plot_1, echo=TRUE-language_and_metadata4] ____________________________________________________
options = 'r plot_1, echo=TRUE', language_and_metadata = ('R', {'echo': True})
@pytest.mark.parametrize("options,language_and_metadata", SAMPLES)
def test_parse_rmd_options(options, language_and_metadata):
> compare(rmd_options_to_metadata(options), language_and_metadata)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/tests/test_cell_metadata.py:59:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = ('R', {'echo': True, 'name': 'plot_1'}), expected = ('R', {'echo': True}), actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -1,6 +1,7 @@
E [
E "R",
E {
E - "echo": true
E + "echo": true,
E + "name": "plot_1"
E }
E ]
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/jupytext/compare.py:47: AssertionError
_________________________________________ test_parse_rmd_options[r chunk_name, include=FALSE, active="Rmd"-language_and_metadata9] _________________________________________
options = 'r chunk_name, include=FALSE, active="Rmd"', language_and_metadata = ('R', {'active': 'Rmd'})
@pytest.mark.parametrize("options,language_and_metadata", SAMPLES)
def test_parse_rmd_options(options, language_and_metadata):
> compare(rmd_options_to_metadata(options), language_and_metadata)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/tests/test_cell_metadata.py:59:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = ('R', {'active': 'Rmd', 'name': 'chunk_name', 'tags': ['remove_cell']}), expected = ('R', {'active': 'Rmd'}), actual_name = 'actual', expected_name = 'expected'
return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -1,6 +1,10 @@
E [
E "R",
E {
E - "active": "Rmd"
E + "active": "Rmd",
E + "name": "chunk_name",
E + "tags": [
E + "remove_cell"
E + ]
E }
E ]
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/jupytext/compare.py:47: AssertionError
_________________________________________________________ test_build_options[r echo=FALSE-language_and_metadata3] __________________________________________________________
options = 'r echo=FALSE', language_and_metadata = ('R', {})
@pytest.mark.parametrize("options,language_and_metadata", SAMPLES)
def test_build_options(options, language_and_metadata):
> compare(metadata_to_rmd_options(*language_and_metadata), options)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/tests/test_cell_metadata.py:64:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = 'r', expected = 'r echo=FALSE', actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -1 +1 @@
E -r echo=FALSE
E +r
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/jupytext/compare.py:47: AssertionError
______________________________________________ test_build_options[python include=FALSE, active="Rmd"-language_and_metadata8] _______________________________________________
options = 'python include=FALSE, active="Rmd"', language_and_metadata = ('python', {'active': 'Rmd'})
@pytest.mark.parametrize("options,language_and_metadata", SAMPLES)
def test_build_options(options, language_and_metadata):
> compare(metadata_to_rmd_options(*language_and_metadata), options)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/tests/test_cell_metadata.py:64:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = 'python active="Rmd"', expected = 'python include=FALSE, active="Rmd"', actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -1 +1 @@
E -python include=FALSE, active="Rmd"
E +python active="Rmd"
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/jupytext/compare.py:47: AssertionError
_________________________________ test_build_options[python noname, tags=c("a", "b", "c"), echo={sum(a+c(1,2))>1}-language_and_metadata6] __________________________________
options = 'python noname, tags=c("a", "b", "c"), echo={sum(a+c(1,2))>1}', language_and_metadata = ('python', {'echo': '#R_CODE#{sum(a+c(1,2))>1}', 'tags': ['a', 'b', 'c']})
@pytest.mark.parametrize("options,language_and_metadata", SAMPLES)
def test_build_options(options, language_and_metadata):
> compare(metadata_to_rmd_options(*language_and_metadata), options)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/tests/test_cell_metadata.py:64:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = 'python tags=c("a", "b", "c"), echo={sum(a+c(1,2))>1}', expected = 'python noname, tags=c("a", "b", "c"), echo={sum(a+c(1,2))>1}', actual_name = 'actual'
expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -1 +1 @@
E -python noname, tags=c("a", "b", "c"), echo={sum(a+c(1,2))>1}
E +python tags=c("a", "b", "c"), echo={sum(a+c(1,2))>1}
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/jupytext/compare.py:47: AssertionError
______________________________________________________ test_build_options[r plot_1, echo=TRUE-language_and_metadata4] ______________________________________________________
options = 'r plot_1, echo=TRUE', language_and_metadata = ('R', {'echo': True})
@pytest.mark.parametrize("options,language_and_metadata", SAMPLES)
def test_build_options(options, language_and_metadata):
> compare(metadata_to_rmd_options(*language_and_metadata), options)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/tests/test_cell_metadata.py:64:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = 'r echo=TRUE', expected = 'r plot_1, echo=TRUE', actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -1 +1 @@
E -r plot_1, echo=TRUE
E +r echo=TRUE
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/jupytext/compare.py:47: AssertionError
__________________________________________ test_parse_rmd_options[r plot_1, dpi=72, fig.path="fig_path/"-language_and_metadata1] ___________________________________________
options = 'r plot_1, dpi=72, fig.path="fig_path/"', language_and_metadata = ('R', {'dpi': 72, 'fig.path': 'fig_path/'})
@pytest.mark.parametrize("options,language_and_metadata", SAMPLES)
def test_parse_rmd_options(options, language_and_metadata):
> compare(rmd_options_to_metadata(options), language_and_metadata)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/tests/test_cell_metadata.py:59:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = ('R', {'dpi': 72, 'fig.path': 'fig_path/', 'name': 'plot_1'}), expected = ('R', {'dpi': 72, 'fig.path': 'fig_path/'}), actual_name = 'actual'
expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -2,6 +2,7 @@
E "R",
E {
E "dpi": 72,
E - "fig.path": "fig_path/"
E + "fig.path": "fig_path/",
E + "name": "plot_1"
E }
E ]
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/jupytext/compare.py:47: AssertionError
_______________________________________________________ test_parse_rmd_options[r echo=FALSE-language_and_metadata3] ________________________________________________________
options = 'r echo=FALSE', language_and_metadata = ('R', {})
@pytest.mark.parametrize("options,language_and_metadata", SAMPLES)
def test_parse_rmd_options(options, language_and_metadata):
> compare(rmd_options_to_metadata(options), language_and_metadata)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/tests/test_cell_metadata.py:59:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = ('R', {'tags': ['remove_input']}), expected = ('R', {}), actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -1,4 +1,8 @@
E [
E "R",
E - {}
E + {
E + "tags": [
E + "remove_input"
E + ]
E + }
E ]
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/jupytext/compare.py:47: AssertionError
============================================================================= warnings summary =============================================================================
jupytext/cell_reader.py:20
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/jupytext/cell_reader.py:20: UserWarning: Sphinx Gallery in version 0.9.0 is not supported by Jupytext. Please use sphinx-gallery<=0.7.0 instead. If that is an issue, feel free to report it at https://github.com/mwouts/jupytext/issues, or even better, prepare a PR to handle the new signature of sphinx_gallery.notebook.rst2md.
warnings.warn(
tests/test_pre_commit_scripts.py::test_manual_call_of_pre_commit_hook
/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/jupytext/cli.py:332: DeprecationWarning: The --pre-commit argument is deprecated. Please consider switching to the pre-commit.com framework (let us know at https://github.com/mwouts/jupytext/issues if that is an issue for you)
warnings.warn(
tests/test_execute.py::test_execute_sync
/usr/lib/python3.8/site-packages/nbconvert/exporters/html.py:110: DeprecationWarning: 'contextfilter' is renamed to 'pass_context', the old name will be removed in Jinja 3.1.
def markdown2html(self, context, source):
tests/test_cm_config.py::test_incorrect_config_message[jupytext.toml-not_a_jupytext_option = true]
tests/test_cm_config.py::test_incorrect_config_message[jupytext.toml-not_a_jupytext_option = true]
tests/test_cm_config.py::test_incorrect_config_message[.jupytext.py-c.not_a_jupytext_option = True]
tests/test_cm_config.py::test_incorrect_config_message[.jupytext.py-c.not_a_jupytext_option = True]
/usr/lib/python3.8/site-packages/traitlets/config/configurable.py:82: DeprecationWarning: Passing unrecognized arguments to super(JupytextConfiguration).__init__(not_a_jupytext_option=True).
object.__init__() takes exactly one argument (the instance to initialize)
This is deprecated in traitlets 4.2.This error will be raised in a future release of traitlets.
super(Configurable, self).__init__(**kwargs)
tests/test_contentsmanager.py: 48 warnings
/usr/lib/python3.8/site-packages/send2trash/plat_gio.py:18: PyGIDeprecationWarning: GObject.GError is deprecated; use GLib.GError instead
except GObject.GError as e:
tests/test_cli.py::test_cli_expect_errors
[warning] The --pre-commit argument is deprecated. Please consider switching to the pre-commit.com framework (let us know at https://github.com/mwouts/jupytext/issues if that is an issue for you)
tests/test_cli.py::test_format_prefix_suffix
[warning] You have passed a file name to the '--to' option, when a format description was expected. Maybe you want to use the '-o' option instead?
-- Docs: https://docs.pytest.org/en/stable/warnings.html
========================================================================= short test summary info ==========================================================================
SKIPPED [1] tests/test_pre_commit_scripts.py:335: pandoc>=2.11 is not available
SKIPPED [1] tests/test_ipynb_to_myst.py:171: myst is available
SKIPPED [1] tests/test_ipynb_to_myst.py:162: myst is available
SKIPPED [1] tests/test_pre_commit_4_sync_execute.py:15: Jupytext folder is not a git repository #814
SKIPPED [1] tests/test_formats.py:324: pandoc>=2.11 is not available
SKIPPED [1] tests/test_pre_commit_0_ipynb_to_py.py:16: Jupytext folder is not a git repository #814
SKIPPED [1] tests/test_mirror.py:208: sphinx_gallery is not available
SKIPPED [11] tests/test_mirror.py:151: sphinx_gallery is not available
SKIPPED [17] tests/test_mirror.py:131: pandoc>=2.11 is not available
SKIPPED [1] tests/test_mirror.py:202: sphinx_gallery is not available
SKIPPED [1] tests/test_execute.py:150: irkernel is not installed
SKIPPED [1] tests/test_pre_commit_5_reformat_markdown.py:15: Jupytext folder is not a git repository #814
SKIPPED [1] tests/test_read_simple_pandoc.py:35: pandoc>=2.11 is not available
SKIPPED [1] tests/test_read_simple_pandoc.py:13: pandoc>=2.11 is not available
SKIPPED [1] tests/test_read_simple_pandoc.py:82: Pandoc is installed
SKIPPED [1] tests/test_read_simple_pandoc.py:64: pandoc>=2.11 is not available
SKIPPED [1] tests/test_read_simple_pandoc.py:50: pandoc>=2.11 is not available
SKIPPED [1] tests/test_auto_ext.py:36: No file_extension in language_info
SKIPPED [1] tests/test_black.py:68: autopep8 not found
SKIPPED [17] tests/test_contentsmanager.py:180: pandoc>=2.11 is not available
SKIPPED [1] tests/test_contentsmanager.py:1188: sphinx_gallery is not available
SKIPPED [2] tests/test_contentsmanager.py:1765: jupyterfs is not available
SKIPPED [1] tests/test_pre_commit_2_sync_nbstripout.py:14: Jupytext folder is not a git repository #814
SKIPPED [1] tests/test_pre_commit_3_sync_black_nbstripout.py:13: Jupytext folder is not a git repository #814
SKIPPED [1] tests/test_cli.py:1075: pandoc>=2.11 is not available
SKIPPED [15] tests/test_cli.py:557: pandoc>=2.11 is not available
SKIPPED [1] tests/test_cli.py:795: sphinx_gallery is not available
SKIPPED [3] tests/test_cli.py:991: pandoc>=2.11 is not available
SKIPPED [5] tests/test_cli.py:1005: pandoc>=2.11 is not available
SKIPPED [1] tests/test_cli.py:1188: Please run 'python -m ipykernel install --name python_kernel --user'
SKIPPED [1] tests/test_pre_commit_1_sync.py:17: Jupytext folder is not a git repository #814
XFAIL tests/test_auto_ext.py::test_auto_from_kernelspecs_works[/home/tkloczko/rpmbuild/BUILD/jupytext-1.11.4/tests/notebooks/ipynb_sage/sage_print_hello.ipynb]
reason: Sage notebooks have Python in their language_info metadata, see #727
FAILED tests/test_cell_metadata.py::test_parse_rmd_options[r plot_1, echo=TRUE-language_and_metadata4] - AssertionError:
FAILED tests/test_cell_metadata.py::test_parse_rmd_options[r chunk_name, include=FALSE, active="Rmd"-language_and_metadata9] - AssertionError:
FAILED tests/test_cell_metadata.py::test_build_options[r echo=FALSE-language_and_metadata3] - AssertionError:
FAILED tests/test_cell_metadata.py::test_build_options[python include=FALSE, active="Rmd"-language_and_metadata8] - AssertionError:
FAILED tests/test_cell_metadata.py::test_build_options[python noname, tags=c("a", "b", "c"), echo={sum(a+c(1,2))>1}-language_and_metadata6] - AssertionError:
FAILED tests/test_cell_metadata.py::test_build_options[r plot_1, echo=TRUE-language_and_metadata4] - AssertionError:
FAILED tests/test_cell_metadata.py::test_parse_rmd_options[r plot_1, dpi=72, fig.path="fig_path/"-language_and_metadata1] - AssertionError:
FAILED tests/test_cell_metadata.py::test_parse_rmd_options[r echo=FALSE-language_and_metadata3] - AssertionError:
============================================== 8 failed, 2480 passed, 94 skipped, 1 xfailed, 57 warnings in 160.49s (0:02:40) ==============================================
pytest-xprocess reminder::Be sure to terminate the started process by running 'pytest --xkill' if you have not explicitly done so in your fixture with 'xprocess.getinfo(<process_name>).terminate()'.
[warning] (rm_rf) error removing /tmp/pytest-of-tkloczko/garbage-cacdfa54-1a74-4a90-aec3-6475cd47892c/test_safe_get_no_perms0
<class 'OSError'>: [Errno 39] Directory not empty: 'test_safe_get_no_perms0'
[warning] (rm_rf) error removing /tmp/pytest-of-tkloczko/garbage-cacdfa54-1a74-4a90-aec3-6475cd47892c/test_safe_delete_no_perms0
<class 'OSError'>: [Errno 39] Directory not empty: 'test_safe_delete_no_perms0'
[warning] (rm_rf) error removing /tmp/pytest-of-tkloczko/garbage-cacdfa54-1a74-4a90-aec3-6475cd47892c/test_safe_set_no_perms0
<class 'OSError'>: [Errno 39] Directory not empty: 'test_safe_set_no_perms0'
[warning] (rm_rf) error removing /tmp/pytest-of-tkloczko/garbage-cacdfa54-1a74-4a90-aec3-6475cd47892c/test_rmtree_errorhandler_rerai0
<class 'OSError'>: [Errno 39] Directory not empty: 'test_rmtree_errorhandler_rerai0'
[warning] (rm_rf) error removing /tmp/pytest-of-tkloczko/garbage-cacdfa54-1a74-4a90-aec3-6475cd47892c/test_rmtree_errorhandler_reado0
<class 'OSError'>: [Errno 39] Directory not empty: 'test_rmtree_errorhandler_reado0'
[warning] (rm_rf) error removing /tmp/pytest-of-tkloczko/garbage-cacdfa54-1a74-4a90-aec3-6475cd47892c
<class 'OSError'>: [Errno 39] Directory not empty: '/tmp/pytest-of-tkloczko/garbage-cacdfa54-1a74-4a90-aec3-6475cd47892c'
Issue Analytics
- State:
- Created 2 years ago
- Comments:12 (4 by maintainers)
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You’re welcome! Thank you for introducing me to
pytest-randomly, that’s an interesting tool (in the end I had to change how the sets of parameters are generated, although I am not sure I understand whypytest-randomlywas mixing my parameters 😄 )BTW I also plan to reduce the number of warnings soon with #893
Just tested 1.13.3 and still with
pytest-randomlysometimes pytaest is failing. Looks like to solve that issue https://github.com/mrbean-bremen/pytest-find-dependencies/ can be used