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1.13.6: pytest is failing (relaxed `jupyter_packaging` dependencies)
See original GitHub issueI’m trying to package your module as an rpm package. So I’m using the typical PEP517 based build, install and test cycle used on building packages from non-root account.
python3 -sBm build -w --no-isolation- because I’m calling
buildwith--no-isolationI’m using during all processes only locally installed modules - install .whl file in </install/prefix>
- run pytest with PYTHONPATH pointing to sitearch and sitelib inside </install/prefix>
Because I’m trying to build all my packages only agains what is installed (--no-isolation) and I have jupyter-packaging 0.11.1 I’ve added the patch:
--- a/pyproject.toml~ 2022-01-11 08:23:50.000000000 +0000
+++ b/pyproject.toml 2022-01-25 20:24:23.103617304 +0000
@@ -1,5 +1,5 @@
[build-system]
-requires = ["jupyter_packaging~=0.7.9", "jupyterlab>=3.0.0,==3.*", "setuptools>=40.8.0", "wheel"]
+requires = ["jupyter_packaging>=0.7.9", "jupyterlab>=3.0.0,==3.*", "setuptools>=40.8.0", "wheel"]
build-backend = "setuptools.build_meta"
[tool.pytest.ini_options]
filterwarnings = [
I’m not sure is that caused that pytest is failing. Latest pytets shows at the end few minor warnings. Here is pytest output:
+ PYTHONPATH=/home/tkloczko/rpmbuild/BUILDROOT/python-jupytext-1.13.6-2.fc35.x86_64/usr/lib64/python3.8/site-packages:/home/tkloczko/rpmbuild/BUILDROOT/python-jupytext-1.13.6-2.fc35.x86_64/usr/lib/python3.8/site-packages
+ /usr/bin/pytest -ra
=========================================================================== test session starts ============================================================================
platform linux -- Python 3.8.12, pytest-6.2.5, py-1.11.0, pluggy-1.0.0
rootdir: /home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6, configfile: pyproject.toml
plugins: anyio-3.3.4, black-0.3.12
collected 2708 items
tests/test_active_cells.py ............................ [ 1%]
tests/test_auto_ext.py ..............................................................x.s....................... [ 4%]
tests/test_black.py ...ssF....... [ 4%]
tests/test_cell_id.py . [ 4%]
tests/test_cell_markers.py .. [ 4%]
tests/test_cell_metadata.py ............................................................ [ 7%]
tests/test_cells.py ................ [ 7%]
tests/test_changelog.py ... [ 7%]
tests/test_cli.py .................................................................................................................................................. [ 13%]
..........FFFF.................................................................................................................................................FF... [ 19%]
s...........................................................................FFFFF..........s................ [ 23%]
tests/test_cli_check.py .. [ 23%]
tests/test_cli_config.py ........... [ 23%]
tests/test_cm_config.py .............. [ 24%]
tests/test_combine.py ................................................... [ 26%]
tests/test_compare.py ..................... [ 26%]
tests/test_config.py .................. [ 27%]
tests/test_contentsmanager.py ....................................................................sssssss........................................................... [ 32%]
.................................................................................................................................................................... [ 38%]
......................................................................................................................................F..s.......................... [ 44%]
...........ss [ 45%]
tests/test_custom_cell_magics.py . [ 45%]
tests/test_doc_files_are_notebooks.py ............... [ 45%]
tests/test_doxygen.py .......... [ 46%]
tests/test_escape_magics.py ................................................................................ [ 49%]
tests/test_execute.py ..FFFFsF [ 49%]
tests/test_formats.py ............................ [ 50%]
tests/test_header.py .......... [ 50%]
tests/test_hide_remove_input_outputs_rmarkdown.py ........ [ 50%]
tests/test_invalid_file.py ... [ 51%]
tests/test_ipynb_to_R.py .... [ 51%]
tests/test_ipynb_to_myst.py .......ss... [ 51%]
tests/test_ipynb_to_py.py .................... [ 52%]
tests/test_ipynb_to_rmd.py ........................ [ 53%]
tests/test_isort.py s [ 53%]
tests/test_jupytext_errors.py .. [ 53%]
tests/test_jupytext_nbconvert_round_trip.py ....................... [ 54%]
tests/test_jupytext_read.py .. [ 54%]
tests/test_knitr_spin.py . [ 54%]
tests/test_load_multiple.py .. [ 54%]
tests/test_markdown_in_code_cells.py .... [ 54%]
tests/test_metadata_filter.py ................. [ 55%]
tests/test_metadata_filters_from_config.py . [ 55%]
tests/test_mirror.py ............................................................................................................................................... [ 60%]
.......................................................................................FFFFFFFFFFFFFFFFFsssssss...........................................ssssssssss [ 66%]
s...............ss.................................................................................................... [ 70%]
tests/test_nbformat_version.py ....... [ 71%]
tests/test_paired_paths.py ...................... [ 72%]
tests/test_pep8.py ............................................................................................................................. [ 76%]
tests/test_pre_commit_0_ipynb_to_py.py s [ 76%]
tests/test_pre_commit_1_sync.py s [ 76%]
tests/test_pre_commit_1_sync_with_config.py s [ 76%]
tests/test_pre_commit_2_sync_nbstripout.py s [ 76%]
tests/test_pre_commit_3_sync_black_nbstripout.py s [ 76%]
tests/test_pre_commit_4_sync_execute.py s [ 76%]
tests/test_pre_commit_5_reformat_markdown.py s [ 76%]
tests/test_pre_commit_mode.py ............ [ 77%]
tests/test_pre_commit_scripts.py ....s... [ 77%]
tests/test_preserve_empty_cells.py ....... [ 77%]
tests/test_pytest.py .. [ 77%]
tests/test_raw_strings.py ......... [ 78%]
tests/test_read_all_py.py .................................................................................................................... [ 82%]
tests/test_read_dotnet_try_markdown.py ... [ 82%]
tests/test_read_empty_text_notebook.py .......................s........... [ 84%]
tests/test_read_folding_markers.py ..... [ 84%]
tests/test_read_incomplete_rmd.py ... [ 84%]
tests/test_read_simple_R.py ............ [ 84%]
tests/test_read_simple_clojure.py . [ 84%]
tests/test_read_simple_csharp.py ....... [ 85%]
tests/test_read_simple_groovy.py . [ 85%]
tests/test_read_simple_hydrogen.py ....... [ 85%]
tests/test_read_simple_ipynb.py . [ 85%]
tests/test_read_simple_java.py . [ 85%]
tests/test_read_simple_julia.py . [ 85%]
tests/test_read_simple_markdown.py .................................... [ 86%]
tests/test_read_simple_matlab.py .. [ 86%]
tests/test_read_simple_nomarker.py .. [ 86%]
tests/test_read_simple_ocaml.py .. [ 87%]
tests/test_read_simple_pandoc.py ....s [ 87%]
tests/test_read_simple_percent.py ...................... [ 87%]
tests/test_read_simple_python.py ................................................ [ 89%]
tests/test_read_simple_quarto.py s [ 89%]
tests/test_read_simple_rmd.py .......... [ 90%]
tests/test_read_simple_rust.py ... [ 90%]
tests/test_read_simple_scheme.py . [ 90%]
tests/test_read_simple_sphinx.py ... [ 90%]
tests/test_read_write_functions.py ..... [ 90%]
tests/test_rmd_to_ipynb.py ...... [ 90%]
tests/test_save_multiple.py ..................................................... [ 92%]
tests/test_stringparser.py .... [ 92%]
tests/test_trust_notebook.py ................................................. [ 94%]
tests/test_unicode.py ............................... [ 95%]
tests/test_using_cli.py F [ 95%]
tests/test_write_does_not_modify_notebook.py .............................................................................................................. [100%]
================================================================================= FAILURES =================================================================================
_________________ test_apply_black_through_jupytext[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Line_breaks_in_LateX_305.ipynb] _________________
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_apply_black_through_jupyt0')
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Line_breaks_in_LateX_305.ipynb'
@requires_black
@pytest.mark.parametrize("nb_file", list_notebooks("ipynb_py")[:1])
def test_apply_black_through_jupytext(tmpdir, nb_file):
# Load real notebook metadata to get the 'auto' extension in --pipe-fmt to work
metadata = read(nb_file).metadata
nb_org = new_notebook(
cells=[new_code_cell("1 +1", id="cell-id")], metadata=metadata
)
nb_black = new_notebook(
cells=[new_code_cell("1 + 1", id="cell-id")], metadata=metadata
)
tmp_ipynb = str(tmpdir.mkdir("notebook_folder").join("notebook.ipynb"))
tmp_py = str(tmpdir.mkdir("script_folder").join("notebook.py"))
# Black in place
write(nb_org, tmp_ipynb)
jupytext([tmp_ipynb, "--pipe", "black"])
nb_now = read(tmp_ipynb)
compare_notebooks(nb_now, nb_black, compare_ids=True)
# Write to another folder using dots
write(nb_org, tmp_ipynb)
jupytext([tmp_ipynb, "--to", "../script_folder//py:percent", "--pipe", "black"])
assert os.path.isfile(tmp_py)
nb_now = read(tmp_py)
nb_now.metadata = metadata
compare_notebooks(nb_now, nb_black)
os.remove(tmp_py)
# Map to another folder based on file name
write(nb_org, tmp_ipynb)
> jupytext(
[
tmp_ipynb,
"--from",
"notebook_folder//ipynb",
"--to",
"script_folder//py:percent",
"--pipe",
"black",
"--check",
"flake8",
]
)
tests/test_black.py:124:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
jupytext/cli.py:669: in jupytext_single_file
pipe_notebook(
jupytext/cli.py:1191: in pipe_notebook
cmd_output = exec_command(
jupytext/cli.py:1113: in exec_command
process = subprocess.Popen(
/usr/lib64/python3.8/subprocess.py:858: in __init__
self._execute_child(args, executable, preexec_fn, close_fds,
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <subprocess.Popen object at 0x7f0b2f89d850>, args = ['flake8', '-'], executable = b'flake8', preexec_fn = None, close_fds = True, pass_fds = (), cwd = None
env = None, startupinfo = None, creationflags = 0, shell = False, p2cread = 14, p2cwrite = 15, c2pread = 16, c2pwrite = 17, errread = -1, errwrite = -1
restore_signals = True, start_new_session = False
def _execute_child(self, args, executable, preexec_fn, close_fds,
pass_fds, cwd, env,
startupinfo, creationflags, shell,
p2cread, p2cwrite,
c2pread, c2pwrite,
errread, errwrite,
restore_signals, start_new_session):
"""Execute program (POSIX version)"""
if isinstance(args, (str, bytes)):
args = [args]
elif isinstance(args, os.PathLike):
if shell:
raise TypeError('path-like args is not allowed when '
'shell is true')
args = [args]
else:
args = list(args)
if shell:
# On Android the default shell is at '/system/bin/sh'.
unix_shell = ('/system/bin/sh' if
hasattr(sys, 'getandroidapilevel') else '/bin/sh')
args = [unix_shell, "-c"] + args
if executable:
args[0] = executable
if executable is None:
executable = args[0]
sys.audit("subprocess.Popen", executable, args, cwd, env)
if (_USE_POSIX_SPAWN
and os.path.dirname(executable)
and preexec_fn is None
and not close_fds
and not pass_fds
and cwd is None
and (p2cread == -1 or p2cread > 2)
and (c2pwrite == -1 or c2pwrite > 2)
and (errwrite == -1 or errwrite > 2)
and not start_new_session):
self._posix_spawn(args, executable, env, restore_signals,
p2cread, p2cwrite,
c2pread, c2pwrite,
errread, errwrite)
return
orig_executable = executable
# For transferring possible exec failure from child to parent.
# Data format: "exception name:hex errno:description"
# Pickle is not used; it is complex and involves memory allocation.
errpipe_read, errpipe_write = os.pipe()
# errpipe_write must not be in the standard io 0, 1, or 2 fd range.
low_fds_to_close = []
while errpipe_write < 3:
low_fds_to_close.append(errpipe_write)
errpipe_write = os.dup(errpipe_write)
for low_fd in low_fds_to_close:
os.close(low_fd)
try:
try:
# We must avoid complex work that could involve
# malloc or free in the child process to avoid
# potential deadlocks, thus we do all this here.
# and pass it to fork_exec()
if env is not None:
env_list = []
for k, v in env.items():
k = os.fsencode(k)
if b'=' in k:
raise ValueError("illegal environment variable name")
env_list.append(k + b'=' + os.fsencode(v))
else:
env_list = None # Use execv instead of execve.
executable = os.fsencode(executable)
if os.path.dirname(executable):
executable_list = (executable,)
else:
# This matches the behavior of os._execvpe().
executable_list = tuple(
os.path.join(os.fsencode(dir), executable)
for dir in os.get_exec_path(env))
fds_to_keep = set(pass_fds)
fds_to_keep.add(errpipe_write)
self.pid = _posixsubprocess.fork_exec(
args, executable_list,
close_fds, tuple(sorted(map(int, fds_to_keep))),
cwd, env_list,
p2cread, p2cwrite, c2pread, c2pwrite,
errread, errwrite,
errpipe_read, errpipe_write,
restore_signals, start_new_session, preexec_fn)
self._child_created = True
finally:
# be sure the FD is closed no matter what
os.close(errpipe_write)
self._close_pipe_fds(p2cread, p2cwrite,
c2pread, c2pwrite,
errread, errwrite)
# Wait for exec to fail or succeed; possibly raising an
# exception (limited in size)
errpipe_data = bytearray()
while True:
part = os.read(errpipe_read, 50000)
errpipe_data += part
if not part or len(errpipe_data) > 50000:
break
finally:
# be sure the FD is closed no matter what
os.close(errpipe_read)
if errpipe_data:
try:
pid, sts = os.waitpid(self.pid, 0)
if pid == self.pid:
self._handle_exitstatus(sts)
else:
self.returncode = sys.maxsize
except ChildProcessError:
pass
try:
exception_name, hex_errno, err_msg = (
errpipe_data.split(b':', 2))
# The encoding here should match the encoding
# written in by the subprocess implementations
# like _posixsubprocess
err_msg = err_msg.decode()
except ValueError:
exception_name = b'SubprocessError'
hex_errno = b'0'
err_msg = 'Bad exception data from child: {!r}'.format(
bytes(errpipe_data))
child_exception_type = getattr(
builtins, exception_name.decode('ascii'),
SubprocessError)
if issubclass(child_exception_type, OSError) and hex_errno:
errno_num = int(hex_errno, 16)
child_exec_never_called = (err_msg == "noexec")
if child_exec_never_called:
err_msg = ""
# The error must be from chdir(cwd).
err_filename = cwd
else:
err_filename = orig_executable
if errno_num != 0:
err_msg = os.strerror(errno_num)
> raise child_exception_type(errno_num, err_msg, err_filename)
E FileNotFoundError: [Errno 2] No such file or directory: 'flake8'
/usr/lib64/python3.8/subprocess.py:1704: FileNotFoundError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_apply_black_through_jupyt0/notebook_folder/notebook.ipynb in format ipynb
[jupytext] Executing black -
[jupytext] Writing /tmp/pytest-of-tkloczko/pytest-128/test_apply_black_through_jupyt0/notebook_folder/notebook.ipynb
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_apply_black_through_jupyt0/notebook_folder/notebook.ipynb in format ipynb
[jupytext] Executing black -
[jupytext] Writing /tmp/pytest-of-tkloczko/pytest-128/test_apply_black_through_jupyt0/script_folder/notebook.py in format ../script_folder//py:percent
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_apply_black_through_jupyt0/notebook_folder/notebook.ipynb in format notebook_folder//ipynb
[jupytext] Executing black -
[jupytext] Executing flake8 -
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
reformatted -
All done! ✨ 🍰 ✨
1 file reformatted.
reformatted -
All done! ✨ 🍰 ✨
1 file reformatted.
reformatted -
All done! ✨ 🍰 ✨
1 file reformatted.
______________________________ test_set_kernel_inplace[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/light_sample.py] _______________________________
py_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/light_sample.py'
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_inplace__home_0')
@pytest.mark.parametrize("py_file", list_notebooks("python"))
def test_set_kernel_inplace(py_file, tmpdir):
tmp_py = str(tmpdir.join("notebook.py"))
copyfile(py_file, tmp_py)
> jupytext([tmp_py, "--set-kernel", "-"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:448:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_inplace__home_0/notebook.py in format py
_________________________ test_set_kernel_inplace[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/python_notebook_sample.py] __________________________
py_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/python_notebook_sample.py'
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_inplace__home_1')
@pytest.mark.parametrize("py_file", list_notebooks("python"))
def test_set_kernel_inplace(py_file, tmpdir):
tmp_py = str(tmpdir.join("notebook.py"))
copyfile(py_file, tmp_py)
> jupytext([tmp_py, "--set-kernel", "-"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:448:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_inplace__home_1/notebook.py in format py
________________________________ test_set_kernel_auto[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/light_sample.py] ________________________________
py_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/light_sample.py'
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_auto__home_tkl0')
@pytest.mark.parametrize("py_file", list_notebooks("python"))
def test_set_kernel_auto(py_file, tmpdir):
tmp_py = str(tmpdir.join("notebook.py"))
tmp_ipynb = str(tmpdir.join("notebook.ipynb"))
copyfile(py_file, tmp_py)
> jupytext(["--to", "ipynb", tmp_py, "--set-kernel", "-"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:463:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_auto__home_tkl0/notebook.py in format py
___________________________ test_set_kernel_auto[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/python_notebook_sample.py] ___________________________
py_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/python_notebook_sample.py'
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_auto__home_tkl1')
@pytest.mark.parametrize("py_file", list_notebooks("python"))
def test_set_kernel_auto(py_file, tmpdir):
tmp_py = str(tmpdir.join("notebook.py"))
tmp_ipynb = str(tmpdir.join("notebook.ipynb"))
copyfile(py_file, tmp_py)
> jupytext(["--to", "ipynb", tmp_py, "--set-kernel", "-"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:463:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_set_kernel_auto__home_tkl1/notebook.py in format py
___________________________________________________________________ test_set_kernel_works_with_pipes_326 ___________________________________________________________________
capsys = <_pytest.capture.CaptureFixture object at 0x7f0b2f3e0e80>
def test_set_kernel_works_with_pipes_326(capsys):
md = u"""```python
1 + 1
```"""
with mock.patch("sys.stdin", StringIO(md)):
> jupytext(["--to", "ipynb", "--set-kernel", "-", "-"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:682:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
____________________________________________________________________________ test_utf8_out_331 _____________________________________________________________________________
capsys = <_pytest.capture.CaptureFixture object at 0x7f0b2f304c70>, caplog = <_pytest.logging.LogCaptureFixture object at 0x7f0b2f304040>
@skip_on_windows
@pytest.mark.filterwarnings("ignore")
def test_utf8_out_331(capsys, caplog):
py = u"from IPython.core.display import HTML; HTML(u'\xd7')"
with mock.patch("sys.stdin", StringIO(py)):
> jupytext(["--to", "ipynb", "--execute", "-"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:696:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
__________________________________________________________ test_create_header_with_set_formats_and_set_kernel[md] __________________________________________________________
format_name = 'md', tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo3')
cwd_tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo3')
@requires_myst
@requires_pandoc
@pytest.mark.parametrize(
"format_name", ["md", "md:myst", "md:pandoc", "py:light", "py:percent"]
)
def test_create_header_with_set_formats_and_set_kernel(format_name, tmpdir, cwd_tmpdir):
"""Test jupytext --set-formats <format_name> --set-kernel - #485"""
ext = format_name.split(":")[0]
tmp_nb = "notebook." + ext
tmpdir.join(tmp_nb).write("\n")
> jupytext(["--set-formats", format_name, "--set-kernel", "-", tmp_nb])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:1033:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading notebook.md in format md
_______________________________________________________ test_create_header_with_set_formats_and_set_kernel[md:myst] ________________________________________________________
format_name = 'md:myst', tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo4')
cwd_tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo4')
@requires_myst
@requires_pandoc
@pytest.mark.parametrize(
"format_name", ["md", "md:myst", "md:pandoc", "py:light", "py:percent"]
)
def test_create_header_with_set_formats_and_set_kernel(format_name, tmpdir, cwd_tmpdir):
"""Test jupytext --set-formats <format_name> --set-kernel - #485"""
ext = format_name.split(":")[0]
tmp_nb = "notebook." + ext
tmpdir.join(tmp_nb).write("\n")
> jupytext(["--set-formats", format_name, "--set-kernel", "-", tmp_nb])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:1033:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading notebook.md in format md
______________________________________________________ test_create_header_with_set_formats_and_set_kernel[md:pandoc] _______________________________________________________
format_name = 'md:pandoc', tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo5')
cwd_tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo5')
@requires_myst
@requires_pandoc
@pytest.mark.parametrize(
"format_name", ["md", "md:myst", "md:pandoc", "py:light", "py:percent"]
)
def test_create_header_with_set_formats_and_set_kernel(format_name, tmpdir, cwd_tmpdir):
"""Test jupytext --set-formats <format_name> --set-kernel - #485"""
ext = format_name.split(":")[0]
tmp_nb = "notebook." + ext
tmpdir.join(tmp_nb).write("\n")
> jupytext(["--set-formats", format_name, "--set-kernel", "-", tmp_nb])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:1033:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading notebook.md in format md
_______________________________________________________ test_create_header_with_set_formats_and_set_kernel[py:light] _______________________________________________________
format_name = 'py:light', tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo6')
cwd_tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo6')
@requires_myst
@requires_pandoc
@pytest.mark.parametrize(
"format_name", ["md", "md:myst", "md:pandoc", "py:light", "py:percent"]
)
def test_create_header_with_set_formats_and_set_kernel(format_name, tmpdir, cwd_tmpdir):
"""Test jupytext --set-formats <format_name> --set-kernel - #485"""
ext = format_name.split(":")[0]
tmp_nb = "notebook." + ext
tmpdir.join(tmp_nb).write("\n")
> jupytext(["--set-formats", format_name, "--set-kernel", "-", tmp_nb])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:1033:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading notebook.py in format py
______________________________________________________ test_create_header_with_set_formats_and_set_kernel[py:percent] ______________________________________________________
format_name = 'py:percent', tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo7')
cwd_tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_create_header_with_set_fo7')
@requires_myst
@requires_pandoc
@pytest.mark.parametrize(
"format_name", ["md", "md:myst", "md:pandoc", "py:light", "py:percent"]
)
def test_create_header_with_set_formats_and_set_kernel(format_name, tmpdir, cwd_tmpdir):
"""Test jupytext --set-formats <format_name> --set-kernel - #485"""
ext = format_name.split(":")[0]
tmp_nb = "notebook." + ext
tmpdir.join(tmp_nb).write("\n")
> jupytext(["--set-formats", format_name, "--set-kernel", "-", tmp_nb])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_cli.py:1033:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading notebook.py in format py
_________________________ test_python_kernel_preserves_R_files[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/R/simple_r_script.R] __________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/R/simple_r_script.R'
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_python_kernel_preserves_R0')
@pytest.mark.parametrize("nb_file", list_notebooks("R"))
def test_python_kernel_preserves_R_files(nb_file, tmpdir):
"""Opening a R file with a Jupyter server that has no R kernel should not modify the file"""
tmp_r_file = str(tmpdir.join("script.R"))
with open(nb_file) as fp:
script = fp.read()
with open(tmp_r_file, "w") as fp:
fp.write(script)
# create contents manager
cm = jupytext.TextFileContentsManager()
cm.root_dir = str(tmpdir)
# open notebook, set Python kernel and save
model = cm.get("script.R")
> model["content"].metadata["kernelspec"] = kernelspec_from_language("python")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_contentsmanager.py:1235:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
_______________________________________________________________________________ test_execute _______________________________________________________________________________
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_execute0'), caplog = <_pytest.logging.LogCaptureFixture object at 0x7f0b2e01d190>
capsys = <_pytest.capture.CaptureFixture object at 0x7f0b2e01dee0>
@requires_nbconvert
@skip_on_windows
def test_execute(tmpdir, caplog, capsys):
tmp_ipynb = str(tmpdir.join("notebook.ipynb"))
tmp_py = str(tmpdir.join("notebook.py"))
with open(tmp_py, "w") as fp:
fp.write(
"""1 + 2
"""
)
> jupytext(args=[tmp_py, "--to", "ipynb", "--execute"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_execute.py:82:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_execute0/notebook.py in format py
__________________________________________________________________________ test_execute_readme_ok __________________________________________________________________________
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_execute_readme_ok0')
@requires_nbconvert
def test_execute_readme_ok(tmpdir):
tmp_md = str(tmpdir.join("notebook.md"))
with open(tmp_md, "w") as fp:
fp.write(
"""
A readme with correct instructions
```python
1 + 2
```
"""
)
> jupytext(args=[tmp_md, "--execute"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_execute.py:104:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_execute_readme_ok0/notebook.md in format md
________________________________________________________________________ test_execute_readme_not_ok ________________________________________________________________________
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_execute_readme_not_ok0')
@requires_nbconvert
@skip_on_windows
def test_execute_readme_not_ok(tmpdir):
tmp_md = str(tmpdir.join("notebook.md"))
with open(tmp_md, "w") as fp:
fp.write(
"""
A readme with incorrect instructions (a is not defined)
```python
a + 1
```
"""
)
import nbconvert
with pytest.raises(
nbconvert.preprocessors.execute.CellExecutionError, match="is not defined"
):
> jupytext(args=[tmp_md, "--execute"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_execute.py:128:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_execute_readme_not_ok0/notebook.md in format md
____________________________________________________________________________ test_execute_sync _____________________________________________________________________________
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_execute_sync0'), caplog = <_pytest.logging.LogCaptureFixture object at 0x7f0b2f72f280>
capsys = <_pytest.capture.CaptureFixture object at 0x7f0b2f72fa90>
@requires_nbconvert
@skip_on_windows
def test_execute_sync(tmpdir, caplog, capsys):
tmp_ipynb = str(tmpdir.join("notebook.ipynb"))
tmp_py = str(tmpdir.join("notebook.py"))
with open(tmp_py, "w") as fp:
fp.write(
"""1 + 2
"""
)
> jupytext(args=[tmp_py, "--set-formats", "py,ipynb", "--sync", "--execute"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_execute.py:143:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_execute_sync0/notebook.py in format py
________________________________________________________________________ test_execute_in_subfolder _________________________________________________________________________
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_execute_in_subfolder0'), caplog = <_pytest.logging.LogCaptureFixture object at 0x7f0b2dd9cd00>
capsys = <_pytest.capture.CaptureFixture object at 0x7f0b2dd9cee0>
@requires_nbconvert
@skip_on_windows
def test_execute_in_subfolder(tmpdir, caplog, capsys):
subfolder = tmpdir.mkdir("subfolder")
tmp_csv = str(subfolder.join("inputs.csv"))
tmp_py = str(subfolder.join("notebook.py"))
tmp_ipynb = str(subfolder.join("notebook.ipynb"))
with open(tmp_csv, "w") as fp:
fp.write("1\n2\n")
with open(tmp_py, "w") as fp:
fp.write(
"""import ast
with open('inputs.csv') as fp:
text = fp.read()
sum(ast.literal_eval(line) for line in text.splitlines())
"""
)
> jupytext(args=[tmp_py, "--to", "ipynb", "--execute"])
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_execute.py:195:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
[jupytext] Reading /tmp/pytest-of-tkloczko/pytest-128/test_execute_in_subfolder0/subfolder/notebook.py in format py
__________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_julia/julia_benchmark_plotly_barchart.ipynb] ___________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_julia/julia_benchmark_plotly_barchart.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Julia 1.1.1\n language: julia\n name: julia-1.1\n nbformat: 4\...\n response["url"],\n "/700/700\' width=\'750\'></iframe>")\ndisplay("text/html", s)\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Julia 1.1.1\n language: julia\n name: julia-1.1\n nbformat: 4\...\n response["url"],\n "/700/700\' width=\'750\'></iframe>")\ndisplay("text/html", s)\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,7 +9,7 @@
E ---
E
E ::: {.cell .code}
E -``` {.julia}
E +``` julia
E # IJulia rocks! So does Plotly. Check it out
E
E using Plotly
E @@ -21,7 +21,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.julia}
E +``` julia
E # Following data taken from http://julialang.org/ frontpage
E benchmarks = ["fib", "parse_int", "quicksort3", "mandel", "pi_sum", "rand_mat_stat", "rand_mat_mul"]
E platforms = ["Fortran", "Julia", "Python", "R", "Matlab", "Mathematica", "Javascript", "Go"]
E @@ -70,7 +70,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.julia}
E +``` julia
E # checkout https://plot.ly/api/ for more Julia examples!
E # But to show off some other Plotly features:
E x = 1:1500
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Notebook_with_R_magic.ipynb] _________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Notebook_with_R_magic.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 2\n language: python\n name: python2\n nbformat: 4\n n...on\n%%R -w 400 -h 240\nggplot(iris, aes(x = Sepal.Length, y = Petal.Length, color=Species)) + geom_point()\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 2\n language: python\n name: python2\n nbformat: 4\n n...n}\n%%R -w 400 -h 240\nggplot(iris, aes(x = Sepal.Length, y = Petal.Length, color=Species)) + geom_point()\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -15,20 +15,20 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %load_ext rpy2.ipython
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %%R
E suppressMessages(require(tidyverse))
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %%R
E ggplot(iris, aes(x = Sepal.Length, y = Petal.Length, color=Species)) + geom_point()
E ```
E @@ -39,7 +39,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %%R -w 400 -h 240
E ggplot(iris, aes(x = Sepal.Length, y = Petal.Length, color=Species)) + geom_point()
E ```
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
____________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Notebook_with_more_R_magic_111.ipynb] _____________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Notebook_with_more_R_magic_111.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...%%R -i df\nlibrary("ggplot2")\nggplot(data = df) + geom_point(aes(x = X, y = Y, color = Letter, size = Z))\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...%%R -i df\nlibrary("ggplot2")\nggplot(data = df) + geom_point(aes(x = X, y = Y, color = Letter, size = Z))\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,7 +9,7 @@
E ---
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %load_ext rpy2.ipython
E import pandas as pd
E
E @@ -25,7 +25,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %%R -i df
E library("ggplot2")
E ggplot(data = df) + geom_point(aes(x = X, y = Y, color = Letter, size = Z))
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
___________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/World population.ipynb] ____________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/World population.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = "---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...o.Layout(title='World population',\n barmode='stack'))\noffline.iplot(fig)\n```\n:::\n"
expected = "---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...o.Layout(title='World population',\n barmode='stack'))\noffline.iplot(fig)\n```\n:::\n"
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -19,7 +19,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import pandas as pd
E import wbdata as wb
E
E @@ -34,7 +34,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E wb.search_indicators('Population, total') # SP.POP.TOTL
E # wb.search_indicators('area')
E # => https://data.worldbank.org/indicator is easier to use
E @@ -46,7 +46,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E indicators = {'SP.POP.TOTL': 'Population, total',
E 'AG.SRF.TOTL.K2': 'Surface area (sq. km)',
E 'AG.LND.TOTL.K2': 'Land area (sq. km)',
E @@ -61,7 +61,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E data.loc['World']
E ```
E :::
E @@ -71,7 +71,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E data.loc[(slice(None), '2017-01-01'), :]['Population, total'].dropna(
E ).sort_values().tail(60).index.get_level_values('country')
E ```
E @@ -82,7 +82,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E zones = ['North America', 'Middle East & North Africa',
E 'Latin America & Caribbean', 'Europe & Central Asia',
E 'Sub-Saharan Africa', 'South Asia',
E @@ -95,7 +95,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E population = data.loc[zones]['Population, total'].swaplevel().unstack()
E population = population[zones]
E assert all(data.loc['World']['Population, total'] == population.sum(axis=1))
E @@ -107,13 +107,13 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import matplotlib.pyplot as plt
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E plt.clf()
E plt.figure(figsize=(10, 5), dpi=100)
E plt.stackplot(population.index, population.values.T / 1e9)
E @@ -135,7 +135,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import plotly.offline as offline
E import plotly.graph_objs as go
E
E @@ -144,7 +144,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E bars = [go.Bar(x=population.index, y=population[zone], name=zone)
E for zone in zones]
E fig = go.Figure(data=bars,
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_____________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/cat_variable.ipynb] ______________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/cat_variable.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n nbformat_minor: 2\n---\n\n::: {.cell .code}\n``` python\ncat = 42\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n nbformat_minor: 2\n---\n\n::: {.cell .code}\n``` {.python}\ncat = 42\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,7 +9,7 @@
E ---
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E cat = 42
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/convert_to_py_then_test_with_update83.ipynb] _________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/convert_to_py_then_test_with_update83.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = "---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...int('asdf')\n```\n:::\n\n::: {.cell .markdown}\nThanks for jupytext!\n:::\n\n::: {.cell .code}\n``` python\n```\n:::\n"
expected = "---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...('asdf')\n```\n:::\n\n::: {.cell .markdown}\nThanks for jupytext!\n:::\n\n::: {.cell .code}\n``` {.python}\n```\n:::\n"
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,7 +9,7 @@
E ---
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %%time
E
E print('asdf')
E @@ -21,7 +21,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
______________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/frozen_cell.ipynb] ______________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/frozen_cell.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...l="{\\"frozen\\":true}"}\n``` python\n# This is an frozen cell\nprint("I\'m frozen so Im not executed :(")\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...{\\"frozen\\":true}"}\n``` {.python}\n# This is an frozen cell\nprint("I\'m frozen so Im not executed :(")\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,14 +9,14 @@
E ---
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E # This is an unfrozen cell. Works as usual.
E print("I'm a regular cell so I run and print!")
E ```
E :::
E
E ::: {.cell .code deletable="false" editable="false" run_control="{\"frozen\":true}"}
E -``` {.python}
E +``` python
E # This is an frozen cell
E print("I'm frozen so Im not executed :(")
E ```
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
________________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter.ipynb] ________________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...l .code}\n``` python\na, b, a+b\n```\n:::\n\n::: {.cell .markdown}\nAnd this is already the end of the notebook\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...code}\n``` {.python}\na, b, a+b\n```\n:::\n\n::: {.cell .markdown}\nAnd this is already the end of the notebook\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -15,7 +15,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E a = 1
E b = 2
E a + b
E @@ -27,13 +27,13 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E a, b
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E a, b, a+b
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_____________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_again.ipynb] _____________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_again.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...n``` python\nimport yaml\nprint(yaml.dump(yaml.load(c)))\n```\n:::\n\n::: {.cell .code}\n``` python\n?next\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n....python}\nimport yaml\nprint(yaml.dump(yaml.load(c)))\n```\n:::\n\n::: {.cell .code}\n``` {.python}\n?next\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,7 +9,7 @@
E ---
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E c = '''
E title: "Quick test"
E output:
E @@ -23,14 +23,14 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import yaml
E print(yaml.dump(yaml.load(c)))
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E ?next
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_____________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_with_raw_cell_in_body.ipynb] _____________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_with_raw_cell_in_body.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...\n::: {.cell .raw}\n```{=ipynb}\nThis is a raw cell\n```\n:::\n\n::: {.cell .markdown}\nThis is a markdown cell\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...\n::: {.cell .raw}\n```{=ipynb}\nThis is a raw cell\n```\n:::\n\n::: {.cell .markdown}\nThis is a markdown cell\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,7 +9,7 @@
E ---
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E 1+2+3
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_____________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_with_raw_cell_on_top.ipynb] ______________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_with_raw_cell_on_top.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n... console\n---\n```\n:::\n\n::: {.cell .code}\n``` python\n1+2+3\n```\n:::\n\n::: {.cell .code}\n``` python\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...le\n---\n```\n:::\n\n::: {.cell .code}\n``` {.python}\n1+2+3\n```\n:::\n\n::: {.cell .code}\n``` {.python}\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -23,13 +23,13 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E 1+2+3
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
____________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/notebook_with_complex_metadata.ipynb] _____________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/notebook_with_complex_metadata.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n nbformat_minor: 2\n---\n\n::: {.cell .code}\n``` python\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n nbformat_minor: 2\n---\n\n::: {.cell .code}\n``` {.python}\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -9,7 +9,7 @@
E ---
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/nteract_with_parameter.ipynb] _________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/nteract_with_parameter.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernel_info:\n name: python3\n kernelspec:\n display_name: Python 3\n language: python\n ...ell .code inputHidden="false" outputHidden="false"}\n``` python\n%matplotlib inline\ndf.plot(kind=\'bar\')\n```\n:::\n'
expected = '---\njupyter:\n kernel_info:\n name: python3\n kernelspec:\n display_name: Python 3\n language: python\n ... .code inputHidden="false" outputHidden="false"}\n``` {.python}\n%matplotlib inline\ndf.plot(kind=\'bar\')\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -11,19 +11,19 @@
E ---
E
E ::: {.cell .code inputHidden="false" outputHidden="false" tags="[\"parameters\"]"}
E -``` {.python}
E +``` python
E param = 4
E ```
E :::
E
E ::: {.cell .code inputHidden="false" outputHidden="false"}
E -``` {.python}
E +``` python
E import pandas as pd
E ```
E :::
E
E ::: {.cell .code inputHidden="false" outputHidden="false"}
E -``` {.python}
E +``` python
E df = pd.DataFrame({'A': [1, 2], 'B': [3 + param, 4]},
E index=pd.Index(['x0', 'x1'], name='x'))
E df
E @@ -31,7 +31,7 @@
E :::
E
E ::: {.cell .code inputHidden="false" outputHidden="false"}
E -``` {.python}
E +``` python
E %matplotlib inline
E df.plot(kind='bar')
E ```
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_____________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/plotly_graphs.ipynb] _____________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/plotly_graphs.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...)],\n layout=go.Layout(title="bar plot"))\nfig.show()\nfig.data[0].marker = dict(color=\'purple\')\nfig\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...)],\n layout=go.Layout(title="bar plot"))\nfig.show()\nfig.data[0].marker = dict(color=\'purple\')\nfig\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -21,14 +21,14 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import plotly.offline as offline
E offline.init_notebook_mode(connected=True)
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import plotly.graph_objects as go
E fig = go.Figure(
E data=[go.Bar(y=[2, 3, 1])],
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/sample_rise_notebook_66.ipynb] ________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/sample_rise_notebook_66.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...:\n\n::: {.cell .markdown cell_style="center" slideshow="{\\"slide_type\\":\\"fragment\\"}"}\nMarkdown cell two\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...:\n\n::: {.cell .markdown cell_style="center" slideshow="{\\"slide_type\\":\\"fragment\\"}"}\nMarkdown cell two\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -13,7 +13,7 @@
E :::
E
E ::: {.cell .code slideshow="{\"slide_type\":\"\"}"}
E -``` {.python}
E +``` python
E 1+1
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/text_outputs_and_images.ipynb] ________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/text_outputs_and_images.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = "---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...w()\n```\n:::\n\n::: {.cell .markdown}\n# Errors\n:::\n\n::: {.cell .code}\n``` python\nundefined_variable\n```\n:::\n"
expected = "---\njupyter:\n kernelspec:\n display_name: Python 3\n language: python\n name: python3\n nbformat: 4\n n...\n```\n:::\n\n::: {.cell .markdown}\n# Errors\n:::\n\n::: {.cell .code}\n``` {.python}\nundefined_variable\n```\n:::\n"
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -19,7 +19,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import sys
E print('using print')
E sys.stdout.write('using sys.stdout.write')
E @@ -28,7 +28,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import logging
E logging.debug('Debug')
E logging.info('Info')
E @@ -44,14 +44,14 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E import pandas as pd
E pd.DataFrame([4])
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E from IPython.display import display
E display(pd.DataFrame([5]))
E display(pd.DataFrame([6]))
E @@ -63,13 +63,13 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E %matplotlib inline
E ```
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E # First plot
E from matplotlib import pyplot as plt
E import numpy as np
E @@ -95,7 +95,7 @@
E :::
E
E ::: {.cell .code}
E -``` {.python}
E +``` python
E undefined_variable
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
______________________________ test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_R/ir_notebook.ipynb] _______________________________
nb_file = '/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_R/ir_notebook.ipynb', no_jupytext_version_number = None
@requires_pandoc
@pytest.mark.parametrize(
"nb_file",
list_notebooks("ipynb", skip="(functional|Notebook with|flavors|invalid|305)"),
)
def test_ipynb_to_pandoc(nb_file, no_jupytext_version_number):
> assert_conversion_same_as_mirror(nb_file, "md:pandoc", "ipynb_to_pandoc")
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:138:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_mirror.py:80: in assert_conversion_same_as_mirror
compare(actual, expected)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
actual = '---\njupyter:\n kernelspec:\n display_name: R\n language: R\n name: ir\n nbformat: 4\n nbformat_minor: 2\...\n``` R\nsum(1:10)\n```\n:::\n\n::: {.cell .code}\n``` R\nplot(cars)\n```\n:::\n\n::: {.cell .code}\n``` R\n```\n:::\n'
expected = '---\njupyter:\n kernelspec:\n display_name: R\n language: R\n name: ir\n nbformat: 4\n nbformat_minor: 2\...}\nsum(1:10)\n```\n:::\n\n::: {.cell .code}\n``` {.R}\nplot(cars)\n```\n:::\n\n::: {.cell .code}\n``` {.R}\n```\n:::\n'
actual_name = 'actual', expected_name = 'expected', return_diff = False
def compare(
actual, expected, actual_name="actual", expected_name="expected", return_diff=False
):
"""Compare two strings, lists or dict-like objects"""
if actual != expected:
diff = difflib.unified_diff(
_multilines(expected),
_multilines(actual),
expected_name,
actual_name,
lineterm="",
)
if expected_name == "" and actual_name == "":
diff = list(diff)[2:]
diff = "\n".join(diff)
if return_diff:
return diff
> raise AssertionError("\n" + diff)
E AssertionError:
E --- expected
E +++ actual
E @@ -13,19 +13,19 @@
E :::
E
E ::: {.cell .code}
E -``` {.R}
E +``` R
E sum(1:10)
E ```
E :::
E
E ::: {.cell .code}
E -``` {.R}
E +``` R
E plot(cars)
E ```
E :::
E
E ::: {.cell .code}
E -``` {.R}
E +``` R
E ```
E :::
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/compare.py:47: AssertionError
--------------------------------------------------------------------------- Captured stderr call ---------------------------------------------------------------------------
[WARNING] Deprecated: --atx-headers. Use --markdown-headings=atx instead.
_____________________________________________________________ test_jupytext_commands_in_the_documentation_work _____________________________________________________________
tmpdir = local('/tmp/pytest-of-tkloczko/pytest-128/test_jupytext_commands_in_the_0')
@requires_black
@requires_myst
@pytest.mark.skipif(
not os.path.isdir(doc_path), reason="Documentation folder is missing"
)
def test_jupytext_commands_in_the_documentation_work(tmpdir):
# Read the documentation as a bash notebook
using_cli = os.path.join(doc_path, "using-cli.md")
assert os.path.isfile(using_cli)
using_cli_nb = jupytext.read(using_cli)
# Run the commands in tmpdir on a sample notebook
jupytext.write(
new_notebook(cells=[new_code_cell("1+1")]), str(tmpdir.join("notebook.ipynb"))
)
os.chdir(str(tmpdir))
cmd_tested = 0
for cell in using_cli_nb.cells:
if cell.cell_type != "code":
continue
if not cell.source.startswith("jupytext"):
continue
for cmd in cell.source.splitlines():
if not cmd.startswith("jupytext"):
continue
# Do not test commands that involve reading a notebook from stdin
if "read ipynb from stdin" in cmd:
continue
# We can't run pytest inside pytest
if "pytest {}" in cmd:
continue
# We need to remove the comments that may follow the jupytext command
if "#" in cmd:
left, comment = cmd.rsplit("#", 1)
if '"' not in comment:
cmd = left
print("Testing: {}".format(cmd))
args = shlex.split(cmd)[1:]
> assert not jupytext_cli(args), cmd
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/test_using_cli.py:58:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:489: in jupytext
exit_code += jupytext_single_file(nb_file, args, log)
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cli.py:593: in jupytext_single_file
kernelspec = kernelspec_from_language(language)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
language = 'python'
def kernelspec_from_language(language):
"""Return the python kernel that matches the current env, or the first kernel that matches the given language"""
if language == "python":
# Return the kernel that matches the current Python executable
for name in find_kernel_specs():
kernel_specs = get_kernel_spec(name)
cmd = kernel_specs.argv[0]
if (
kernel_specs.language == "python"
and os.path.isfile(cmd)
and os.path.samefile(cmd, sys.executable)
):
return {
"name": name,
"language": language,
"display_name": kernel_specs.display_name,
}
> raise ValueError(
"No kernel found that matches the current python executable {}\n".format(
sys.executable
)
+ "Install one with 'python -m ipykernel install --name kernel_name [--user]'"
)
E ValueError: No kernel found that matches the current python executable /usr/bin/python3
E Install one with 'python -m ipykernel install --name kernel_name [--user]'
/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/kernels.py:46: ValueError
--------------------------------------------------------------------------- Captured stdout call ---------------------------------------------------------------------------
Testing: jupytext --to py notebook.ipynb
[jupytext] Reading notebook.ipynb in format ipynb
[jupytext] Writing notebook.py
Testing: jupytext --to py:percent notebook.ipynb
[jupytext] Reading notebook.ipynb in format ipynb
[jupytext] Writing notebook.py in format py:percent (destination file replaced [use --update to preserve cell outputs and ids])
Testing: jupytext --to py:percent --opt comment_magics=false notebook.ipynb
[jupytext] Reading notebook.ipynb in format ipynb
[jupytext] Writing notebook.py in format py:percent (destination file replaced [use --update to preserve cell outputs and ids])
Testing: jupytext --to markdown notebook.ipynb
[jupytext] Reading notebook.ipynb in format ipynb
[jupytext] Writing notebook.md
Testing: jupytext --output script.py notebook.ipynb
[jupytext] Reading notebook.ipynb in format ipynb
[jupytext] Writing script.py
Testing: jupytext --to notebook notebook.py
[jupytext] Reading notebook.py in format py
[jupytext] Writing notebook.ipynb (destination file replaced [use --update to preserve cell outputs and ids])
Testing: jupytext --update --to notebook notebook.py
[jupytext] Reading notebook.py in format py
Testing: jupytext --to md --test notebook.ipynb
[jupytext] Reading notebook.ipynb in format ipynb
Testing: jupytext --to md --output - notebook.ipynb
---
jupyter:
jupytext:
comment_magics: false
main_language: python
text_representation:
extension: .md
format_name: markdown
format_version: '1.3'
jupytext_version: 1.13.6
---
```python
1+1
Testing: jupytext --set-formats ipynb,py notebook.ipynb [jupytext] Reading notebook.ipynb in format ipynb [jupytext] Updating notebook metadata with ‘{“jupytext”: {“formats”: “ipynb,py”}}’ [jupytext] Updating notebook.ipynb [jupytext] Updating notebook.py Testing: jupytext --sync notebook.ipynb [jupytext] Reading notebook.ipynb in format ipynb [jupytext] Loading notebook.py [jupytext] Updating the timestamp of notebook.py Testing: jupytext --set-kernel - notebook.md [jupytext] Reading notebook.md in format md ============================================================================= warnings summary ============================================================================= jupytext/cell_reader.py:20 /home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/jupytext/cell_reader.py:20: UserWarning: Sphinx Gallery in version 0.10.1 is not supported by Jupytext. Please use sphinx-gallery<=0.7.0 instead. If that is an issue, feel free to report it at https://github.com/mwouts/jupytext/issues, or even better, prepare a PR to handle the new signature of sphinx_gallery.notebook.rst2md. warnings.warn(
tests/test_cli.py::test_format_prefix_suffix [warning] You might have passed a file name to the ‘–to’ option, when a format description was expected. Maybe you want to use the ‘-o’ option instead?
tests/test_contentsmanager.py: 48 warnings [warning] GObject.GError is deprecated; use GLib.GError instead
– Docs: https://docs.pytest.org/en/stable/warnings.html ========================================================================= short test summary info ========================================================================== SKIPPED [1] tests/test_auto_ext.py:36: No file_extension in language_info SKIPPED [1] tests/test_black.py:68: autopep8 not found SKIPPED [1] tests/test_black.py:79: flake8 not found SKIPPED [1] tests/test_cli.py:807: sphinx_gallery is not available SKIPPED [1] tests/test_cli.py:1231: Please run ‘python -m ipykernel install --name python_kernel --user’ SKIPPED [7] tests/test_contentsmanager.py:204: quarto>=0.2 is not available SKIPPED [1] tests/test_contentsmanager.py:1290: sphinx_gallery is not available SKIPPED [2] tests/test_contentsmanager.py:1867: jupyterfs is not available SKIPPED [1] tests/test_execute.py:150: irkernel is not installed SKIPPED [1] tests/test_ipynb_to_myst.py:162: myst is available SKIPPED [1] tests/test_ipynb_to_myst.py:171: myst is available SKIPPED [1] tests/test_isort.py:8: isort not found SKIPPED [7] tests/test_mirror.py:141: quarto>=0.2 is not available SKIPPED [11] tests/test_mirror.py:168: sphinx_gallery is not available SKIPPED [1] tests/test_mirror.py:219: sphinx_gallery is not available SKIPPED [1] tests/test_mirror.py:225: sphinx_gallery is not available SKIPPED [1] tests/test_pre_commit_0_ipynb_to_py.py:16: Jupytext folder is not a git repository #814 SKIPPED [1] tests/test_pre_commit_1_sync.py:17: Jupytext folder is not a git repository #814 SKIPPED [1] tests/test_pre_commit_1_sync_with_config.py:14: Jupytext folder is not a git repository #814 SKIPPED [1] tests/test_pre_commit_2_sync_nbstripout.py:14: Jupytext folder is not a git repository #814 SKIPPED [1] tests/test_pre_commit_3_sync_black_nbstripout.py:13: Jupytext folder is not a git repository #814 SKIPPED [1] tests/test_pre_commit_4_sync_execute.py:15: Jupytext folder is not a git repository #814 SKIPPED [1] tests/test_pre_commit_5_reformat_markdown.py:15: Jupytext folder is not a git repository #814 SKIPPED [1] tests/test_pre_commit_scripts.py:219: flake8 not found SKIPPED [1] tests/test_read_empty_text_notebook.py:14: quarto is not available SKIPPED [1] tests/test_read_simple_pandoc.py:82: Pandoc is installed SKIPPED [1] tests/test_read_simple_quarto.py:9: quarto>=0.2 is not available XFAIL tests/test_auto_ext.py::test_auto_from_kernelspecs_works[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_sage/sage_print_hello.ipynb] reason: Sage notebooks have Python in their language_info metadata, see #727 FAILED tests/test_black.py::test_apply_black_through_jupytext[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Line_breaks_in_LateX_305.ipynb] - Fi… FAILED tests/test_cli.py::test_set_kernel_inplace[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/light_sample.py] - ValueError: No kernel found tha… FAILED tests/test_cli.py::test_set_kernel_inplace[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/python_notebook_sample.py] - ValueError: No kernel… FAILED tests/test_cli.py::test_set_kernel_auto[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/light_sample.py] - ValueError: No kernel found that m… FAILED tests/test_cli.py::test_set_kernel_auto[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/python/python_notebook_sample.py] - ValueError: No kernel fo… FAILED tests/test_cli.py::test_set_kernel_works_with_pipes_326 - ValueError: No kernel found that matches the current python executable /usr/bin/python3 FAILED tests/test_cli.py::test_utf8_out_331 - ValueError: No kernel found that matches the current python executable /usr/bin/python3 FAILED tests/test_cli.py::test_create_header_with_set_formats_and_set_kernel[md] - ValueError: No kernel found that matches the current python executable /usr/bin/python3 FAILED tests/test_cli.py::test_create_header_with_set_formats_and_set_kernel[md:myst] - ValueError: No kernel found that matches the current python executable /usr/bin/p… FAILED tests/test_cli.py::test_create_header_with_set_formats_and_set_kernel[md:pandoc] - ValueError: No kernel found that matches the current python executable /usr/bin… FAILED tests/test_cli.py::test_create_header_with_set_formats_and_set_kernel[py:light] - ValueError: No kernel found that matches the current python executable /usr/bin/… FAILED tests/test_cli.py::test_create_header_with_set_formats_and_set_kernel[py:percent] - ValueError: No kernel found that matches the current python executable /usr/bi… FAILED tests/test_contentsmanager.py::test_python_kernel_preserves_R_files[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/R/simple_r_script.R] - ValueErro… FAILED tests/test_execute.py::test_execute - ValueError: No kernel found that matches the current python executable /usr/bin/python3 FAILED tests/test_execute.py::test_execute_readme_ok - ValueError: No kernel found that matches the current python executable /usr/bin/python3 FAILED tests/test_execute.py::test_execute_readme_not_ok - ValueError: No kernel found that matches the current python executable /usr/bin/python3 FAILED tests/test_execute.py::test_execute_sync - ValueError: No kernel found that matches the current python executable /usr/bin/python3 FAILED tests/test_execute.py::test_execute_in_subfolder - ValueError: No kernel found that matches the current python executable /usr/bin/python3 FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_julia/julia_benchmark_plotly_barchart.ipynb] - Asse… FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Notebook_with_R_magic.ipynb] - AssertionError: FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/Notebook_with_more_R_magic_111.ipynb] - Assertio… FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/World population.ipynb] - AssertionError: FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/cat_variable.ipynb] - AssertionError: FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/convert_to_py_then_test_with_update83.ipynb] - A… FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/frozen_cell.ipynb] - AssertionError: FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter.ipynb] - AssertionError: FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_again.ipynb] - AssertionError: FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_with_raw_cell_in_body.ipynb] - Assertion… FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/jupyter_with_raw_cell_on_top.ipynb] - AssertionE… FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/notebook_with_complex_metadata.ipynb] - Assertio… FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/nteract_with_parameter.ipynb] - AssertionError: FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/plotly_graphs.ipynb] - AssertionError: FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/sample_rise_notebook_66.ipynb] - AssertionError: FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_py/text_outputs_and_images.ipynb] - AssertionError: FAILED tests/test_mirror.py::test_ipynb_to_pandoc[/home/tkloczko/rpmbuild/BUILD/jupytext-1.13.6/tests/notebooks/ipynb_R/ir_notebook.ipynb] - AssertionError: FAILED tests/test_using_cli.py::test_jupytext_commands_in_the_documentation_work - ValueError: No kernel found that matches the current python executable /usr/bin/python3 ============================================= 36 failed, 2621 passed, 50 skipped, 1 xfailed, 50 warnings in 148.36s (0:02:28) ==============================================
</details>
Issue Analytics
- State:
- Created 2 years ago
- Comments:14 (7 by maintainers)
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Ha ha thank you @kloczek! And I see that three of them are tests that I just added in the latest release… I really need to add an entry on the CI that will test the package in the absence of a kernel.
Feel free to close this ticket.