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QUESTION: What needs to be updated for format_Version
See original GitHub issueHey there @mwouts !! still enjoying jupytext a lot!
I have a question about the format_version . I am working with a colleague @nkorinek and each time he pushes a notebook + md or py, and i try to open a notebook i get the error below:
File python-fundamentals-variables.py is in format/version=light/1.5 (current version is 1.4). It would not be safe to override the source of python-fundamentals-variables.ipynb with that file. Please remove one or the other file.
the notebook can not be opened until i delete said .py or md file. We have worked around it but i see I have format_version 1.4 and he has 1.5 (looking at the .py file metadata at the top). He is on linux i believe and I am mac.
ive tried to reinstall from conda-forge (was previously installed via pip) but that does not help. how do i upgrade whatever format_Version is calling? i’ve gone through the docs and see discussion of the format version but don’t see how i can align version (upgrade to 1.5!) with my colleagues for seamless collaboration! Many thanks for any suggestions.
a bit more information - here is my environment.
(base) CIRES-EL-LM-020:edsc-summer-2020 leahwasser$ conda list
# packages in environment at /Users/leahwasser/miniconda3:
#
# Name Version Build Channel
alabaster 0.7.12 pypi_0 pypi
appnope 0.1.0 pypi_0 pypi
argh 0.26.2 pypi_0 pypi
asn1crypto 1.3.0 py37_0 conda-forge
async-generator 1.10 pypi_0 pypi
attrs 19.3.0 py_0 conda-forge
babel 2.8.0 pypi_0 pypi
backcall 0.1.0 pypi_0 pypi
bleach 3.1.5 pypi_0 pypi
brotlipy 0.7.0 py37h9bfed18_1000 conda-forge
bzip2 1.0.8 h0b31af3_2 conda-forge
ca-certificates 2020.4.5.1 hecc5488_0 conda-forge
certifi 2020.4.5.1 py37hc8dfbb8_0 conda-forge
cffi 1.14.0 py37h356ff06_0 conda-forge
chardet 3.0.4 py37hc8dfbb8_1006 conda-forge
click 7.1.2 pypi_0 pypi
colorama 0.4.3 pypi_0 pypi
conda 4.8.3 py37hc8dfbb8_1 conda-forge
conda-package-handling 1.6.0 py37h9bfed18_2 conda-forge
cryptography 2.8 py37he655712_2 conda-forge
decorator 4.4.2 py_0 conda-forge
defusedxml 0.6.0 pypi_0 pypi
docutils 0.16 pypi_0 pypi
entrypoints 0.3 pypi_0 pypi
gitdb 4.0.5 pypi_0 pypi
gitpython 3.1.2 pypi_0 pypi
icu 64.2 h6de7cb9_1 conda-forge
idna 2.9 py_1 conda-forge
imagesize 1.2.0 pypi_0 pypi
importlib-metadata 1.6.0 py37hc8dfbb8_0 conda-forge
importlib_metadata 1.6.0 0 conda-forge
ipykernel 5.3.0 pypi_0 pypi
ipython 7.14.0 pypi_0 pypi
ipython-genutils 0.2.0 pypi_0 pypi
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.5.1 pypi_0 pypi
jedi 0.17.0 pypi_0 pypi
jinja2 2.11.2 pypi_0 pypi
jsonschema 3.2.0 py37hc8dfbb8_1 conda-forge
jupyter-book 0.7.0b3 pypi_0 pypi
jupyter-cache 0.2.1 pypi_0 pypi
jupyter-client 6.1.3 pypi_0 pypi
jupyter-sphinx 0.2.4 pypi_0 pypi
jupyter_core 4.6.3 py37hc8dfbb8_1 conda-forge
jupytext 1.4.2 pyh9f0ad1d_0 conda-forge
latexcodec 2.0.0 pypi_0 pypi
libarchive 3.3.3 h02796b4_1008 conda-forge
libcxx 10.0.0 1 conda-forge
libcxxabi 4.0.1 hcfea43d_1 conda-forge
libedit 3.1.20170329 hcfe32e1_1001 conda-forge
libffi 3.2.1 h4a8c4bd_1007 conda-forge
libiconv 1.15 h0b31af3_1006 conda-forge
libsass 0.20.0 pypi_0 pypi
libxml2 2.9.10 h53d96d6_0 conda-forge
livereload 2.6.1 pypi_0 pypi
lz4-c 1.9.2 h4a8c4bd_0 conda-forge
lzo 2.10 h1de35cc_1000 conda-forge
markdown-it-py 0.4.5 pypi_0 pypi
markupsafe 1.1.1 pypi_0 pypi
mistune 0.8.4 pypi_0 pypi
more-itertools 8.2.0 pypi_0 pypi
myst-nb 0.8.1 pypi_0 pypi
myst-parser 0.8.1 pypi_0 pypi
nbclient 0.3.1 pypi_0 pypi
nbconvert 5.6.1 pypi_0 pypi
nbdime 2.0.0 pypi_0 pypi
nbformat 5.0.6 py_0 conda-forge
ncurses 6.1 h0a44026_1002 conda-forge
nest-asyncio 1.3.3 pypi_0 pypi
notebook 6.0.3 pypi_0 pypi
openssl 1.1.1g h0b31af3_0 conda-forge
oset 0.1.3 pypi_0 pypi
packaging 20.3 pypi_0 pypi
pandocfilters 1.4.2 pypi_0 pypi
parso 0.7.0 pypi_0 pypi
pathtools 0.1.2 pypi_0 pypi
pexpect 4.8.0 pypi_0 pypi
pickleshare 0.7.5 pypi_0 pypi
pip 20.0.2 py_2 conda-forge
pluggy 0.13.1 pypi_0 pypi
port-for 0.3.1 pypi_0 pypi
prometheus-client 0.7.1 pypi_0 pypi
prompt-toolkit 3.0.5 pypi_0 pypi
ptyprocess 0.6.0 pypi_0 pypi
py 1.8.1 pypi_0 pypi
pybtex 0.22.2 pypi_0 pypi
pybtex-docutils 0.2.2 pypi_0 pypi
pycosat 0.6.3 py37h9bfed18_1004 conda-forge
pycparser 2.20 py_0 conda-forge
pydata-sphinx-theme 0.2.2 pypi_0 pypi
pygments 2.6.1 pypi_0 pypi
pyopenssl 19.1.0 py_1 conda-forge
pyparsing 2.4.7 pypi_0 pypi
pyrsistent 0.16.0 py37h9bfed18_0 conda-forge
pysocks 1.7.1 py37hc8dfbb8_1 conda-forge
pytest 5.4.1 pypi_0 pypi
python 3.7.6 h90870a6_5_cpython conda-forge
python-dateutil 2.8.1 pypi_0 pypi
python-libarchive-c 2.9 py37_0 conda-forge
python.app 1.3 py37h9bfed18_1 conda-forge
python_abi 3.7 1_cp37m conda-forge
pytz 2019.3 pypi_0 pypi
pyyaml 5.3.1 py37h9bfed18_0 conda-forge
pyzmq 19.0.1 pypi_0 pypi
readline 8.0 hcfe32e1_0 conda-forge
requests 2.23.0 pyh8c360ce_2 conda-forge
ruamel-yaml 0.16.10 pypi_0 pypi
ruamel-yaml-clib 0.2.0 pypi_0 pypi
ruamel_yaml 0.15.80 py37h9bfed18_1001 conda-forge
send2trash 1.5.0 pypi_0 pypi
setuptools 46.1.3 py37hc8dfbb8_0 conda-forge
six 1.14.0 py_1 conda-forge
smmap 3.0.4 pypi_0 pypi
snowballstemmer 2.0.0 pypi_0 pypi
sphinx 2.4.4 pypi_0 pypi
sphinx-autobuild 0.7.1 pypi_0 pypi
sphinx-book-theme 0.0.17 pypi_0 pypi
sphinx-copybutton 0.2.11 pypi_0 pypi
sphinx-togglebutton 0.1.1 pypi_0 pypi
sphinxcontrib-applehelp 1.0.2 pypi_0 pypi
sphinxcontrib-bibtex 1.0.0 pypi_0 pypi
sphinxcontrib-devhelp 1.0.2 pypi_0 pypi
sphinxcontrib-htmlhelp 1.0.3 pypi_0 pypi
sphinxcontrib-jsmath 1.0.1 pypi_0 pypi
sphinxcontrib-qthelp 1.0.3 pypi_0 pypi
sphinxcontrib-serializinghtml 1.1.4 pypi_0 pypi
sqlalchemy 1.3.17 pypi_0 pypi
sqlite 3.30.1 h93121df_0 conda-forge
terminado 0.8.3 pypi_0 pypi
testpath 0.4.4 pypi_0 pypi
tk 8.6.10 hbbe82c9_0 conda-forge
tornado 6.0.4 pypi_0 pypi
tqdm 4.45.0 pyh9f0ad1d_0 conda-forge
traitlets 4.3.3 py37hc8dfbb8_1 conda-forge
urllib3 1.25.9 py_0 conda-forge
watchdog 0.10.2 pypi_0 pypi
wcwidth 0.1.9 pypi_0 pypi
webencodings 0.5.1 pypi_0 pypi
wheel 0.34.2 py_1 conda-forge
widgetsnbextension 3.5.1 pypi_0 pypi
xz 5.2.5 h0b31af3_0 conda-forge
yaml 0.2.4 h0b31af3_0 conda-forge
zipp 3.1.0 py_0 conda-forge
zlib 1.2.11 h0b31af3_1006 conda-forge
zstd 1.4.4 h4b3e974_3 conda-forge
but this is what my .py file metadata look like
# ---
# jupyter:
# jupytext:
# formats: ipynb,py:light
# text_representation:
# extension: .py
# format_name: light
# format_version: '1.4'
# jupytext_version: 1.2.4
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
i am working in jupyter locally. but can’t seem to identify how the jupytext version is 1.2.4. maybe this is an envt issue so please tell me if this is out of scope to ask here. many thanks
Issue Analytics
- State:
- Created 3 years ago
- Reactions:2
- Comments:9 (4 by maintainers)
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😂
Thank you @lwasser ! I’ve followed your suggestion at #534 so that the first part of the message is indeed simpler (no mention of the file format version in the first sentence). So we will have something like this:
ahhh ok got it 😃 then what you have is perfect! there are just a lot of different numbers up there that i was wondering… where did they come from. maybe you have been working nonstop day and night to release jupytext version 42!!! 😃
thank you again. this will be a great and useful update!!