Can autoreload magics be kept above isort output?

I have tried to look around, but I am not sure if one of the recent fixed addresses this problem. I am using nbQA for its isort functionality and have the following problem.

A notebook which looks like this (MWE)

%load_ext autoreload
%autoreload 2

import sys
import pathlib

is converted by nbqa isort into

import pathlib
import sys

%load_ext autoreload
%autoreload 2

which actually invalidates the autoreload extension that must be loaded before any imports. I have tried to use # isort:skip or put it in a different cell, but to no avail. Do you know if there’s a fix for this?

Otherwise, thanks for the great hooks!

[girip11]

If your isort config is present in setup.cfg, then create a different file called my_isort.cfg and pass it via the - -nbqa-config flag

[Alexander-Serov]

Btw, I have found another workaround: I can put the jupyter magic in the startup script of jupyter thus removing it from the nb. It will apply to all notebooks, but for me it is the desired behavior.