Failed to activate the Hydrogen package

Description:

I’m not able to run R code with Hydrogen, I did not want to publish this issue cause could have been due outdated dependencies, but I’ve upgraded all pip packages and R and Hydrogen still does not work.

I’ve also reinstalled several times Hydrogen but keeps broken.

Steps to Reproduce:

1. [First Step] Open a .R file in Atom
2. [Second Step] shift+enter to run any random line, and right top popup with trace about the issue.

Versions:

Arch Linux x86_64
5.0.7-zen1-1-zen

Atom    : 1.36.0
Electron: 4.1.1
Chrome  : 69.0.3497.128
Node    : 10.11.0

Plugins:

Do you have any Hydrogen plugins installed and active?

• hydrogen-python
• Hydrogen Launcher
• Data Explorer

Logs:

[Enter steps to reproduce:]

1. …
2. …

Atom: 1.36.0 x64 Electron: 4.1.1 OS: “Arch Linux” Thrown From: Hydrogen package 2.9.0

Stack Trace

Failed to activate the Hydrogen package

At Refused to evaluate a string as JavaScript because 'unsafe-eval' is not an allowed source of script in the following Content Security Policy directive: "script-src 'self'".


EvalError: Refused to evaluate a string as JavaScript because 'unsafe-eval' is not an allowed source of script in the following Content Security Policy directive: "script-src 'self'".

    at Function (<anonymous>)
    at field (/packages/Hydrogen/node_modules/vega-lib/build/vega.js:110:7)
    at /packages/Hydrogen/node_modules/vega-lib/build/vega.js:118:12
    at isArray (/packages/Hydrogen/node_modules/vega-lib/build/vega.js:2:66)
    at /packages/Hydrogen/node_modules/vega-lib/build/vega.js:5:2)
    at /packages/Hydrogen/node_modules/vega-lib/build/vega.js:38114:3)
    at Module._compile (/usr/lib/atom/src/native-compile-cache.js:87:30)
    at Object.value [as .js] (/usr/lib/atom/src/compile-cache.js:235:23)
    at Module.load (internal/modules/cjs/loader.js:602:32)
    at tryModuleLoad (internal/modules/cjs/loader.js:541:12)
    at Function.Module._load (internal/modules/cjs/loader.js:533:3)
    at Module.require (internal/modules/cjs/loader.js:640:17)
    at require (/usr/lib/atom/src/native-compile-cache.js:47:27)
    at xhtml (/packages/Hydrogen/node_modules/vega-embed/build/vega-embed.js:2:91)
    at /packages/Hydrogen/node_modules/vega-embed/build/vega-embed.js:5:2)
    at /packages/Hydrogen/node_modules/vega-embed/build/vega-embed.js:3473:3)
    at Module._compile (/usr/lib/atom/src/native-compile-cache.js:87:30)
    at Object.value [as .js] (/usr/lib/atom/src/compile-cache.js:235:23)
    at Module.load (internal/modules/cjs/loader.js:602:32)
    at tryModuleLoad (internal/modules/cjs/loader.js:541:12)
    at Function.Module._load (internal/modules/cjs/loader.js:533:3)
    at Module.require (internal/modules/cjs/loader.js:640:17)
    at require (/usr/lib/atom/src/native-compile-cache.js:47:27)
    at /packages/Hydrogen/node_modules/@nteract/transform-vega/lib/index.js:36:41)
    at /packages/Hydrogen/node_modules/@nteract/transform-vega/lib/index.js:178:3)
    at Module._compile (/usr/lib/atom/src/native-compile-cache.js:87:30)
    at Object.value [as .js] (/usr/lib/atom/src/compile-cache.js:235:23)
    at Module.load (internal/modules/cjs/loader.js:602:32)
    at tryModuleLoad (internal/modules/cjs/loader.js:541:12)
    at Function.Module._load (internal/modules/cjs/loader.js:533:3)

Commands

     -0:04.3.0 hydrogen:run-and-move-down (input.hidden-input)

Non-Core Packages

atom-language-r 1.4.8 
atom-python-run 0.9.7 
atom-runner 2.7.1 
autocomplete-font-awesome 1.0.2 
autocomplete-latex 0.9.0 
autocomplete-paths 2.12.2 
autocomplete-python 1.14.0 
autocomplete-R 0.6.0 
browser-plus 0.0.98 
browser-plus-open-new-window 0.0.1 
browser-plus-zoom 0.0.2 
build 0.70.0 
build-rscript 0.6.2 
busy-signal 2.0.1 
cobalt2-syntax 0.5.3 
color-picker 2.3.0 
dark-flat-ui 1.2.4 
file-icons 2.1.31 
git-log 0.4.1 
git-plus 8.6.2 
git-time-machine 2.1.0 
glacier-dark-ui 1.5.0 
hacking-the-kernel 1.7.4 
hacking-the-kernel-ui 1.8.5 
highlight-line 0.12.0 
highlight-selected 0.16.0 
Hydrogen 2.9.0 
ide-python 1.4.1 
ide-r 0.1.8 
intentions 1.1.5 
jumpy 5.0.2 
language-latex 1.2.0 
latex 0.50.2 
latex-autocomplete 1.1.1 
latex-completions 0.3.6 
linter 2.3.0 
linter-latex 1.0.0 
linter-python 3.1.2 
linter-ui-default 1.7.1 
markdown-preview-plus 3.8.1 
markdown-table-editor 1.1.1 
merge-conflicts 1.4.5 
minimap 4.29.9 
minimap-autohider 1.6.0 
minimap-highlight-selected 4.6.1 
minimap-pigments 0.2.2 
minimap-titles 1.15.0 
multi-cursor 2.1.5 
outlander-syntax 2.0.0 
outlander-ui 1.4.0 
pdf-view 0.71.0 
pigments 0.40.2 
platformio-ide-terminal 2.9.1 
python-debugger 0.2.0 
python-indent 1.1.7 
python-tools 0.6.9 
snow-dark-syntax 0.1.1 
split-diff 1.6.0 
Sublime-Style-Column-Selection 1.7.5 
svg-preview 0.14.0 
sync-settings 0.8.6 
toggle-docks 0.1.0 
wakatime 7.0.9 

[onlurking]

can replicate this issue on latest version of Manjaro

[BenRussert]

I dont really know what I’m looking at here, but I see something about “use system electron” or “electron 3”, either of which could cause the issue.

Is there no way to install from a deb on arch? We’ve now had 3 reports of the issue, all from arch users, but I dont know anything about that distro to guess what it could be.