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pd.to_datetime() throws if caching is on with Null-like arguments

See original GitHub issue

Code Sample, a copy-pastable example if possible

import pandas as pd
result = pd.to_datetime([pd.NaT, None], cache=True)

Problem description

It results in error:

… ~/anaconda3/lib/python3.6/site-packages/pandas/core/indexes/base.py in get_indexer(self, target, method, limit, tolerance) 3242 3243 if not self.is_unique: -> 3244 raise InvalidIndexError(‘Reindexing only valid with uniquely’ 3245 ’ valued Index objects’) 3246

InvalidIndexError: Reindexing only valid with uniquely valued Index objects

Expected Output

The same as result = pd.to_datetime([pd.NaT, None],cache=False):

DatetimeIndex(['NaT', 'NaT'], dtype='datetime64[ns]', freq=None)

Output of pd.show_versions()

INSTALLED VERSIONS ------------------ commit: None python: 3.6.2.final.0 python-bits: 64 OS: Linux OS-release: 4.4.0-53-generic machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: en_US.UTF-8

pandas: 0.23.4 pytest: 3.2.1 pip: 10.0.1 setuptools: 36.5.0.post20170921 Cython: 0.28.3 numpy: 1.13.1 scipy: 1.1.0 pyarrow: None xarray: None IPython: 6.1.0 sphinx: 1.6.3 patsy: 0.4.1 dateutil: 2.6.1 pytz: 2017.2 blosc: None bottleneck: 1.2.1 tables: 3.4.2 numexpr: 2.6.2 feather: None matplotlib: 2.0.2 openpyxl: 2.4.8 xlrd: 1.1.0 xlwt: 1.3.0 xlsxwriter: 0.9.8 lxml: 3.8.0 bs4: 4.6.0 html5lib: 0.9999999 sqlalchemy: 1.1.13 pymysql: None psycopg2: None jinja2: 2.9.6 s3fs: 0.1.3 fastparquet: None pandas_gbq: None pandas_datareader: None [paste the output of pd.show_versions() here below this line]

Issue Analytics

  • State:closed
  • Created 5 years ago
  • Comments:6 (5 by maintainers)

github_iconTop GitHub Comments

1reaction
jrebackcommented, Aug 24, 2020

pls raise a new issue with the example

0reactions
blinksebcommented, Aug 24, 2020

Hello guys,

It looks like this bug is back in business in the latest version, but a bit harder to trigger:

pandas versions >>> pd.show_versions()

INSTALLED VERSIONS

commit : f2ca0a2665b2d169c97de87b8e778dbed86aea07 python : 3.8.5.final.0 python-bits : 64 OS : Linux OS-release : 5.7.15-200.fc32.x86_64 Version : #1 SMP Tue Aug 11 16:36:14 UTC 2020 machine : x86_64 processor : x86_64 byteorder : little LC_ALL : None LANG : en_GB.UTF-8 LOCALE : en_GB.UTF-8

pandas : 1.1.1 numpy : 1.19.1 pytz : 2020.1 dateutil : 2.8.1 pip : 20.0.2 setuptools : 46.1.3 Cython : None pytest : None hypothesis : None sphinx : None blosc : None feather : None xlsxwriter : None lxml.etree : None html5lib : None pymysql : 0.10.0 psycopg2 : None jinja2 : None IPython : None pandas_datareader: None bs4 : None bottleneck : None fsspec : None fastparquet : None gcsfs : None matplotlib : None numexpr : None odfpy : None openpyxl : None pandas_gbq : None pyarrow : None pytables : None pyxlsb : None s3fs : None scipy : None sqlalchemy : 1.3.19 tables : None tabulate : 0.8.7 xarray : None xlrd : None xlwt : None numba : None

How to reproduce:

import pandas as pd

s = pd.Series([pd.NaT] * 2000 + [None] * 2000, dtype='object')
pd.to_datetime(s)

Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/sbrochet/venvs/tmp-fa372ee62ee9bef/lib64/python3.8/site-packages/pandas/core/tools/datetimes.py", line 801, in to_datetime
    result = arg.map(cache_array)
  File "/home/sbrochet/venvs/tmp-fa372ee62ee9bef/lib64/python3.8/site-packages/pandas/core/series.py", line 3970, in map
    new_values = super()._map_values(arg, na_action=na_action)
  File "/home/sbrochet/venvs/tmp-fa372ee62ee9bef/lib64/python3.8/site-packages/pandas/core/base.py", line 1131, in _map_values
    indexer = mapper.index.get_indexer(values)
  File "/home/sbrochet/venvs/tmp-fa372ee62ee9bef/lib64/python3.8/site-packages/pandas/core/indexes/base.py", line 2980, in get_indexer
    raise InvalidIndexError(
pandas.errors.InvalidIndexError: Reindexing only valid with uniquely valued Index objects

The key here is to have enough entries in the Series to trigger the caching system.

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