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Add AutoAdjustChannel transform

See original GitHub issue

Is your feature request related to a problem? Please describe. Now we have AddChannel and AsChannelFirst transforms, need users to manually select expected transform to convert their data to be “channel-first”. Several internal researchers got confused by the wrong transform, especially when their image and label have different shapes(maybe image is 3 channels data and channel last, label is single channel data and doesn’t have channel dim). Actually, we can automatically adjust channel dim for most cases based on the spatial_size from meta_data. If advanced users really want to do some special logic, they can use AddChannel and AsChannelFirst directly.

Issue Analytics

  • State:closed
  • Created 3 years ago
  • Comments:5 (5 by maintainers)

github_iconTop GitHub Comments

1reaction
rijobrocommented, Mar 2, 2021

Perfect, thanks!

0reactions
Nic-Macommented, Mar 2, 2021

Hi @rijobro ,

Yes, because all the data in MONAI should be channel_first and you can get the original_channel_dim from meta dict. Then I think you can restore the original channel dim or remove channel dim, right?

Thanks.

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