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KeyError: 'label' monai/apps/auto3dseg/data_analyzer.py

See original GitHub issue

Describe the bug running python -m monai.apps.auto3dseg DataAnalyzer get_all_case_stats with --label_key=None

there’s a KeyError: 'label' with this line: https://github.com/Project-MONAI/MONAI/blob/6e77d57938a4253353265616b54ab8be3f2d5ab3/monai/apps/auto3dseg/data_analyzer.py#L265

would be great to have test cases for label_key=None

cc @mingxin-zheng do you have time for this?

Issue Analytics

  • State:closed
  • Created a year ago
  • Comments:5 (5 by maintainers)

github_iconTop GitHub Comments

1reaction
mingxin-zhengcommented, Oct 28, 2022

@wyli Sure I can fix this.

There is a test for CPU case but not GPU case. I will add it in the SIM_GPU_TEST_CASES https://github.com/Project-MONAI/MONAI/blob/6e77d57938a4253353265616b54ab8be3f2d5ab3/tests/test_auto3dseg.py#L73

0reactions
mingxin-zhengcommented, Oct 31, 2022

Thanks @wyli . You are right. It seems None and "None" are treated as special inputs for NoneType in Python Fire. Other inputs such as “NoNe” , or “none” are treated as str.

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