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Failed to fetch Sample from MONAI Label Server

See original GitHub issue

Discussed in https://github.com/Project-MONAI/MONAILabel/discussions/858

^{Originally posted by dyollb July 1, 2022} I am trying MONAILabel for the first time.

I put my images in following hierarchy (I have about 60 images, and 3 labeled images, single label):

- F:\Data\eyes_MONAILabel
  - labels
    - final
      - prefix_001.nii.gz
      - prefix_002.nii.gz
      - prefix_003.nii.gz
  - prefix_001.nii.gz
  - prefix_002.nii.gz
  - prefix_003.nii.gz
  - prefix_004.nii.gz
  - prefix_005.nii.gz
  - ...

I installed

slicer preview 5.1.0-2022-06-28, and MONAI plugin
MONAILabel current main branch (pip install monai-label did not work, when I entered the URL in Slicer I got an error)
- git clone https://github.com/Project-MONAI/MONAILabel
- pip install torch torchvision --extra-index-url https://download.pytorch.org/whl/cu113
- pip install -e MONAILabel

Starting the server

first downloed the app
monailabel apps --download --name radiology --output apps
the start the server
monailabel start_server --app apps/radiology --studies "F:\Data\eyes_MONAILabel" --conf models deepedit

The problem I am having

I could start the plugin and enter the URL.
Then I ran Train until it reached 100%
Then I pressed Nex Sample

Since the error pop-up cannot be resized I scrolled down and show the rest of the callstack:

Is this due to incompatible Slicer / Slicer plugin / MONAILabel app / MONAILabel package versions?</div>

Issue Analytics

State:
Created a year ago
Reactions:1
Comments:8 (1 by maintainers)

Top GitHub Comments

2reactions

lassoancommented, Jul 1, 2022

Sorry for the complications, it was a regression in Slicer Preview Release (Slicer-5.1.x) introduced a few days ago that we have fixed. MONAILabel will work well in Slicer-5.1.x releases downloaded tomorrow or later.

2reactions

jlvahldiekcommented, Jul 1, 2022

I can confirm this, today I encountered the same error with Slicer 5.1.0-2022-06-28. Downgrading to 5.0.2 temporarily solved the problem.

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