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Hi-res plots can be quite slow
See original GitHub issueI just learned about this nice wrapper, but for me it takes too long to plot large xr.dataarray’s.
I make the call
control3d.isel(time=1).plot()
and then after one second this appears as should
<matplotlib.collections.QuadMesh at 0x1c203e94a8>
and then it takes around one minute for the plot to appear. It’s a (time: 1, x: 256, y: 220) dataarray of 1.35MB.
When I use hydrogen inside the atom editor it works like a charm (fast).
aaron.spring@d147-139:~$ conda list
# packages in environment at /Users/aaron.spring/anaconda3:
#
# Name Version Build Channel
_ipyw_jlab_nb_ext_conf 0.1.0 py36_0
alabaster 0.7.12 py_0 conda-forge
altair 2.3.0 py36_1001 conda-forge
anaconda custom py36ha4fed55_0
anaconda-client 1.7.1 py_0 conda-forge
anaconda-navigator 1.9.6 py36_0
anaconda-project 0.8.2 py_1 conda-forge
appdirs 1.4.3 <pip>
appnope 0.1.0 py36_1000 conda-forge
appscript 1.0.1 py36h470a237_0 conda-forge
asn1crypto 0.24.0 py36_1003 conda-forge
astroid 2.1.0 py36_1000 conda-forge
astropy 3.1 py36h470a237_0 conda-forge
atomicwrites 1.2.1 py_0 conda-forge
attrs 18.2.0 py_0 conda-forge
autopep8 1.4.1 py_0 conda-forge
babel 2.6.0 py_1 conda-forge
backcall 0.1.0 py_0 conda-forge
backports 1.0 py_2 conda-forge
backports.shutil_get_terminal_size 1.0.0 py_3 conda-forge
beautifulsoup4 4.6.3 py36_1000 conda-forge
bitarray 0.8.3 py36h470a237_0 conda-forge
bkcharts 0.2 py36_0 conda-forge
black 18.9b0 <pip>
blas 1.0 mkl
blaze 0.11.3 py36_0 conda-forge
bleach 3.0.1 py_0 conda-forge
blinker 1.4 py_1 conda-forge
blosc 1.14.4 hfc679d8_0 conda-forge
bokeh 1.0.2 py36_1000 conda-forge
boost-cpp 1.67.0 h3a22d5f_0 conda-forge
boto 2.49.0 py36_0
boto3 1.9.20 py_0 conda-forge
botocore 1.12.20 py_0 conda-forge
bottleneck 1.2.1 py36h7eb728f_1 conda-forge
branca 0.3.0 py_0 conda-forge
bz2file 0.98 py_0 conda-forge
bzip2 1.0.6 1 conda-forge
ca-certificates 2018.11.29 ha4d7672_0 conda-forge
cairo 1.14.12 he6fea26_5 conda-forge
cartopy 0.17.0 py36h81b52dc_0 conda-forge
cdo 1.9.5 h249571a_5 conda-forge
certifi 2018.11.29 py36_1000 conda-forge
cffi 1.11.5 py36h5e8e0c9_1 conda-forge
cftime 1.0.3.4 py36h7eb728f_0 conda-forge
chardet 3.0.4 py36_1003 conda-forge
cite2c 0.2.1 <pip>
clangdev 6.0.1 default_1 conda-forge
click 7.0 py_0 conda-forge
click-plugins 1.0.4 py_0 conda-forge
cligj 0.5.0 py_0 conda-forge
cloudpickle 0.6.0 py_0 conda-forge
clyent 1.2.2 py_1 conda-forge
cmocean 1.2 py_0 conda-forge
colorama 0.3.9 py_1 conda-forge
conda 4.5.12 py36_1000 conda-forge
conda-build 3.17.5 py36_0 conda-forge
conda-env 2.6.0 1 conda-forge
conda-verify 3.1.1 py36_1000 conda-forge
contextlib2 0.5.5 py_2 conda-forge
cryptography 2.2.1 py36hdffb7b8_1 conda-forge
cryptography-vectors 2.4.2 py_1000 conda-forge
curl 7.61.1 h74213dd_2 conda-forge
cycler 0.10.0 <pip>
cycler 0.10.0 py_1 conda-forge
cython 0.29.2 py36hfc679d8_0 conda-forge
cytoolz 0.9.0.1 py36h470a237_1 conda-forge
dask 1.0.0 py_0 conda-forge
dask-core 1.0.0 py_0 conda-forge
datashape 0.5.4 py36_0 conda-forge
dbus 1.13.0 h3a4f0e9_0 conda-forge
decorator 4.3.0 py_0 conda-forge
descartes 1.1.0 py_2 conda-forge
distributed 1.25.1 py36_1000 conda-forge
docutils 0.14 py36_1001 conda-forge
eccodes 2.9.2 hc15e6af_1 conda-forge
entrypoints 0.2.3 py36_1002 conda-forge
eofs 1.3.0 py_1 conda-forge
esmf 7.1.0r h35eb876_3 conda-forge
esmpy 7.1.0r py36_1 conda-forge
et_xmlfile 1.0.1 py36_1000 conda-forge
expat 2.2.5 hfc679d8_2 conda-forge
fastcache 1.0.2 py36h470a237_1 conda-forge
fftw 3.3.8 h470a237_1 conda-forge
filelock 3.0.9 py_0 conda-forge
fiona 1.7.13 py36hb00a9d7_4 conda-forge
flake8 3.5.0 py36_1000 conda-forge
flask 1.0.2 py_2 conda-forge
flask-cors 3.0.6 py_0 conda-forge
folium 0.6.0 py_0 conda-forge
fontconfig 2.13.1 hce039c3_0 conda-forge
freetype 2.9.1 h6debe1e_4 conda-forge
freexl 1.0.5 h470a237_2 conda-forge
future 0.17.0 py36_1000 conda-forge
gdal 2.2.4 py36hb00a9d7_10 conda-forge
gensim 3.4.0 py36h1de35cc_0
geographiclib 1.49 py_0 conda-forge
geopandas 0.4.0 py_1 conda-forge
geopy 1.17.0 py_0 conda-forge
geos 3.6.2 hfc679d8_3 conda-forge
geotiff 1.4.2 h700e5ad_4 conda-forge
get_terminal_size 1.0.0 h7520d66_0
gettext 0.19.8.1 h1f1d5ed_1 conda-forge
gevent 1.3.7 py36h470a237_0 conda-forge
giflib 5.1.4 h470a237_1 conda-forge
gitdb2 2.0.5 <pip>
GitPython 2.1.11 <pip>
glib 2.55.0 h464dc38_2 conda-forge
glob2 0.6 py_0 conda-forge
gmp 6.1.2 hfc679d8_0 conda-forge
gmpy2 2.0.8 py36hb705a9b_2 conda-forge
greenlet 0.4.13 py36_0 conda-forge
h5netcdf 0.6.2 py_0 conda-forge
h5py 2.8.0 py36h097b052_4 conda-forge
hdf4 4.2.13 h951d187_2 conda-forge
hdf5 1.10.3 hc401514_2 conda-forge
heapdict 1.0.0 py36_1000 conda-forge
holoviews 1.10.9 py_0 pyviz
html5lib 1.0.1 py_0 conda-forge
hvplot 0.2.1 py_0 pyviz
icu 58.2 hfc679d8_0 conda-forge
idna 2.8 py36_1000 conda-forge
imageio 2.3.0 py_1 conda-forge
imagesize 1.1.0 py_0 conda-forge
intel-openmp 2019.0 118
ipykernel 5.1.0 py36h24bf2e0_1001 conda-forge
ipyleaflet 0.8.1 py36_0 conda-forge
ipython 7.2.0 py36h24bf2e0_1000 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.4.2 py_0 conda-forge
isort 4.3.4 py36_1000 conda-forge
itsdangerous 0.24 py_2 conda-forge
jasper 1.900.1 hff1ad4c_5 conda-forge
jbig 2.1 h470a237_1001 conda-forge
jdcal 1.4 py_1 conda-forge
jedi 0.13.2 py36_1000 conda-forge
jinja2 2.10 py_1 conda-forge
jmespath 0.9.3 py_1 conda-forge
jpeg 9c h470a237_1 conda-forge
json-c 0.12.1 h470a237_1 conda-forge
jsonschema 3.0.0a3 py36_1000 conda-forge
jupyter 1.0.0 py_1 conda-forge
jupyter-kernel-gateway 2.1.0 <pip>
jupyter_client 5.2.3 py_1 conda-forge
jupyter_console 6.0.0 py_0 conda-forge
jupyter_contrib_core 0.3.3 py_2 conda-forge
jupyter_contrib_nbextensions 0.5.0 py36_1000 conda-forge
jupyter_core 4.4.0 py_0 conda-forge
jupyter_highlight_selected_word 0.2.0 py36_1000 conda-forge
jupyter_latex_envs 1.4.4 py36_1000 conda-forge
jupyter_nbextensions_configurator 0.4.0 py36_1000 conda-forge
jupyterlab 0.34.12 py36_1000 conda-forge
jupyterlab-github 0.6.1 <pip>
jupyterlab_launcher 0.13.1 py_2 conda-forge
jupyterlab_server 0.2.0 py_0 conda-forge
jupyterthemes 0.19.6 <pip>
kealib 1.4.10 hb88cf67_0 conda-forge
keyring 17.0.0 py36_1000 conda-forge
kiwisolver 1.0.1 <pip>
kiwisolver 1.0.1 py36h2d50403_2 conda-forge
krb5 1.16.1 hbb41f41_0 conda-forge
lazy-object-proxy 1.3.1 py36h470a237_0 conda-forge
lesscpy 0.13.0 <pip>
libaec 1.0.2 hfc679d8_1 conda-forge
libarchive 3.3.3 h823be47_0 conda-forge
libcurl 7.61.1 hbdb9355_2 conda-forge
libcxx 6.0.1 0 conda-forge
libcxxabi 4.0.1 hebd6815_0
libdap4 3.19.1 h18059cb_1 conda-forge
libedit 3.1.20170329 haf1bffa_1 conda-forge
libffi 3.2.1 hfc679d8_5 conda-forge
libgdal 2.2.4 hd83b57f_10 conda-forge
libgfortran 3.0.1 h93005f0_2
libiconv 1.15 h470a237_3 conda-forge
libkml 1.3.0 hccc92b1_8 conda-forge
liblief 0.9.0 h2a1bed3_0
libnetcdf 4.6.1 h350cafa_11 conda-forge
libopenblas 0.3.3 hdc02c5d_3
libpng 1.6.35 ha92aebf_2 conda-forge
libpq 10.5 hf16a0db_0 conda-forge
libsodium 1.0.16 h470a237_1 conda-forge
libspatialindex 1.8.5 hfc679d8_3 conda-forge
libspatialite 4.3.0a h3b29d86_23 conda-forge
libssh2 1.8.0 h5b517e9_2 conda-forge
libtiff 4.0.9 he6b73bb_2 conda-forge
libxml2 2.9.8 h422b904_5 conda-forge
libxslt 1.1.32 h88dbc4e_2 conda-forge
llvm-meta 6.0.1 0 conda-forge
llvmdev 6.0.1 h2d50403_2 conda-forge
llvmlite 0.26.0 py36h3fea490_1000 conda-forge
locket 0.2.0 py_2 conda-forge
lxml 4.2.5 py36hc9114bc_0 conda-forge
lzo 2.10 0 conda-forge
markupsafe 1.1.0 py36h470a237_0 conda-forge
matplotlib 3.0.0 <pip>
matplotlib 3.0.2 py36_1 conda-forge
matplotlib-base 3.0.2 py36hb2d221d_1 conda-forge
mccabe 0.6.1 py_1 conda-forge
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mkl 2018.0.3 1
mkl-service 1.1.2 py36h6b9c3cc_5
mkl_fft 1.0.10 py36_0 conda-forge
mkl_random 1.0.2 py36_0 conda-forge
more-itertools 4.3.0 py36_1000 conda-forge
mpc 1.1.0 hb705a9b_6 conda-forge
mpfr 4.0.1 h16a7912_0 conda-forge
mpi 1.0 mpich conda-forge
mpich 3.2.1 h26a2512_7 conda-forge
mpmath 1.0.0 py_1 conda-forge
msgpack-python 0.6.0 py36h2d50403_0 conda-forge
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munch 2.3.2 py_0 conda-forge
navigator-updater 0.2.1 py36_0
nbconvert 5.3.1 py_1 conda-forge
nbdime 1.0.3 <pip>
nbformat 4.4.0 py_1 conda-forge
ncurses 6.1 hfc679d8_1 conda-forge
netcdf-fortran 4.4.4 h71ea97b_10 conda-forge
netcdf4 1.4.2 py36hac939d9_0 conda-forge
networkx 2.2 py_1 conda-forge
nltk 3.2.5 py_0 conda-forge
nodejs 10.8.0 hfc679d8_1 conda-forge
nose 1.3.7 py36_1002 conda-forge
notebook 5.7.4 py36_1000 conda-forge
notebook 5.6.0 <pip>
numba 0.41.0 py36hf8a1672_0 conda-forge
numexpr 2.6.8 py36hf8a1672_0 conda-forge
numpy 1.15.4 py36h6a91979_0
numpy-base 1.15.4 py36h8a80b8c_0
numpydoc 0.8.0 py_1 conda-forge
oauthlib 2.1.0 py_0 conda-forge
odo 0.5.1 py_1 conda-forge
olefile 0.46 py_0 conda-forge
openblas 0.2.20 8 conda-forge
openjpeg 2.3.0 h316dc23_3 conda-forge
openpyxl 2.5.8 py_0 conda-forge
openssl 1.0.2p h1de35cc_1002 conda-forge
osmnx 0.8.2 py_0 conda-forge
ossuuid 1.6.2 hfc679d8_0 conda-forge
owslib 0.17.0 py_0 conda-forge
packaging 18.0 py_0 conda-forge
pandas 0.23.4 py36hf8a1672_0 conda-forge
pandas-datareader 0.7.0 <pip>
pandoc 2.3.1 0 conda-forge
pandocfilters 1.4.2 py_1 conda-forge
param 1.8.1 py_0 pyviz
parso 0.3.1 py_0 conda-forge
partd 0.3.8 py_1 conda-forge
path.py 11.0.1 py_0 conda-forge
pathlib2 2.3.3 py36_1000 conda-forge
patsy 0.5.0 py_1 conda-forge
pcre 8.41 hfc679d8_3 conda-forge
pep8 1.7.1 py_0 conda-forge
pexpect 4.6.0 py36_1000 conda-forge
pickleshare 0.7.5 py36_1000 conda-forge
pillow 5.3.0 py36hc736899_0 conda-forge
pip 18.1 <pip>
pip 18.1 py36_1000 conda-forge
pixman 0.34.0 h470a237_3 conda-forge
pkginfo 1.4.2 py_1 conda-forge
pluggy 0.7.1 py_0 conda-forge
ply 3.11 py_1 conda-forge
PMMPIESM 0.1 <pip>
poppler 0.67.0 h4d7e492_3 conda-forge
poppler-data 0.4.9 0 conda-forge
postgresql 10.5 ha408888_0 conda-forge
proj4 4.9.3 h470a237_8 conda-forge
prometheus-client 0.3.1 <pip>
prometheus_client 0.4.1 py_0 conda-forge
prompt_toolkit 2.0.5 py_0 conda-forge
proplot 1.0 <pip>
psutil 5.4.8 py36h470a237_0 conda-forge
psycopg2 2.7.6.1 py36hdffb7b8_0 conda-forge
ptyprocess 0.6.0 py36_1000 conda-forge
py 1.6.0 py_0 conda-forge
py-lief 0.9.0 py36hd4eaf27_0
pycodestyle 2.4.0 py_1 conda-forge
pycosat 0.6.3 py36h470a237_1 conda-forge
pycparser 2.19 py_0 conda-forge
pycrypto 2.6.1 py36h470a237_2 conda-forge
pycurl 7.43.0.2 py36hdbc3d79_0
pydocstyle 3.0.0 <pip>
pyepsg 0.3.2 py_1 conda-forge
pyfinance 1.1.1 <pip>
pyflakes 1.6.0 py_1 conda-forge
pygments 2.2.0 py_1 conda-forge
pyjwt 1.6.4 py_0 conda-forge
pykdtree 1.3.1 py36h7eb728f_2 conda-forge
pylint 2.2.2 py36_1000 conda-forge
pyodbc 4.0.25 py36hfc679d8_0 conda-forge
pyopenssl 18.0.0 py36_1000 conda-forge
pyparsing 2.3.0 <pip>
pyparsing 2.2.2 py_0 conda-forge
pyproj 1.9.5.1 py36h508ed2a_6 conda-forge
pyqt 5.6.0 py36h8210e8a_8 conda-forge
pyrsistent 0.14.8 py36h470a237_0 conda-forge
pysal 1.14.4.post2 py36_1001 conda-forge
pyshp 1.2.12 py_0 conda-forge
pysocks 1.6.8 py36_1002 conda-forge
pytables 3.4.4 py36h55d7349_3 conda-forge
pytest 4.0.2 py36_1000 conda-forge
pytest-arraydiff 0.2 py_0 conda-forge
pytest-astropy 0.4.0 py_0 conda-forge
pytest-doctestplus 0.1.3 py_0 conda-forge
pytest-openfiles 0.3.0 py_0 conda-forge
pytest-remotedata 0.3.0 py_0 conda-forge
python 3.6.6 h5001a0f_0 conda-forge
python-cdo 1.4.0 py_1 conda-forge
python-crfsuite 0.9.6 py36h2d50403_0 conda-forge
python-dateutil 2.7.5 <pip>
python-dateutil 2.7.3 py_0 conda-forge
python-jsonrpc-server 0.0.2 <pip>
python-language-server 0.21.2 <pip>
python-libarchive-c 2.8 py36_1004 conda-forge
python.app 1.2 py36h470a237_200 conda-forge
pytz 2018.7 <pip>
pytz 2018.5 py_0 conda-forge
pyviz_comms 0.6.0 py_0 pyviz
pywavelets 1.0.1 py36h7eb728f_0 conda-forge
pyyaml 3.13 py36h470a237_1 conda-forge
pyzmq 17.1.2 py36hae99301_1 conda-forge
pyzmq 17.1.2 <pip>
qt 5.6.2 hd4c90f3_9 conda-forge
qtawesome 0.5.1 pyh8a2030e_1 conda-forge
qtconsole 4.4.3 py_0 conda-forge
qtpy 1.5.1 pyh8a2030e_0 conda-forge
rauth 0.7.3 <pip>
readline 7.0 haf1bffa_1 conda-forge
requests 2.21.0 py36_1000 conda-forge
requests 2.19.1 <pip>
requests-oauthlib 1.0.0 py_1 conda-forge
rope 0.10.7 py_1 conda-forge
rtree 0.8.3 py36_1000 conda-forge
ruamel_yaml 0.15.71 py36h470a237_0 conda-forge
s3transfer 0.1.13 py36_1001 conda-forge
scikit-image 0.14.1 py36hfc679d8_1 conda-forge
scikit-learn 0.20.1 py36h4f467ca_0
scipy 1.1.0 py36h28f7352_1
seaborn 0.9.0 <pip>
seaborn 0.9.0 py_0 conda-forge
send2trash 1.5.0 py_0 conda-forge
setuptools 40.6.3 py36_0 conda-forge
shapely 1.6.4 py36h164cb2d_1 conda-forge
simplegeneric 0.8.1 py_1 conda-forge
singledispatch 3.4.0.3 py36_1000 conda-forge
sip 4.18.1 py36hfc679d8_0 conda-forge
six 1.12.0 py36_1000 conda-forge
smart_open 1.7.1 py_0 conda-forge
smmap2 2.0.5 <pip>
snakeviz 1.0.0 <pip>
snowballstemmer 1.2.1 py_1 conda-forge
sortedcollections 1.0.1 py_1 conda-forge
sortedcontainers 2.0.5 py_0 conda-forge
sphinx 1.8.2 py36_1000 conda-forge
sphinxcontrib 1.0 py36_1
sphinxcontrib-websupport 1.1.0 py_1 conda-forge
spyder 3.3.2 py36_1001 conda-forge
spyder-kernels 0.2.6 py_1 conda-forge
sqlalchemy 1.2.15 py36h470a237_0 conda-forge
sqlite 3.26.0 hb1c47c0_0 conda-forge
statsmodels 0.9.0 py36h7eb728f_0 conda-forge
sympy 1.3 py36_1000 conda-forge
tblib 1.3.2 py_1 conda-forge
terminado 0.8.1 py36_1001 conda-forge
testpath 0.4.2 py36_1000 conda-forge
tk 8.6.8 ha92aebf_0 conda-forge
toml 0.10.0 <pip>
toolz 0.9.0 py_1 conda-forge
tornado 5.1.1 py36h470a237_0 conda-forge
tqdm 4.26.0 py_0 conda-forge
traitlets 4.3.2 py36_1000 conda-forge
traittypes 0.2.1 py_1 conda-forge
twython 3.7.0 py_0 conda-forge
typed-ast 1.1.1 py36h470a237_0 conda-forge
typing 3.6.4 py36_0 conda-forge
udunits2 2.2.27.6 h3a4f0e9_1 conda-forge
unicodecsv 0.14.1 py_1 conda-forge
unixodbc 2.3.7 h09ba92c_0 conda-forge
urllib3 1.23 py36_1001 conda-forge
vincent 0.4.4 py_1 conda-forge
wcwidth 0.1.7 py_1 conda-forge
webencodings 0.5.1 py_1 conda-forge
werkzeug 0.14.1 py_0 conda-forge
wheel 0.32.3 py36_0 conda-forge
widgetsnbextension 3.4.2 py36_1000 conda-forge
wrapt 1.10.11 py36h470a237_1 conda-forge
xarray 0.11.2 py36_1000 conda-forge
xerces-c 3.2.0 h5d6a6da_2 conda-forge
xesmf 0.1.1 py36_0 conda-forge
xlrd 1.1.0 py_2 conda-forge
xlsxwriter 1.1.1 py_0 conda-forge
xlwings 0.15.1 py36_0 conda-forge
xlwt 1.3.0 py_1 conda-forge
xmltodict 0.11.0 <pip>
xz 5.2.4 h470a237_1 conda-forge
yaml 0.1.7 h470a237_1 conda-forge
yapf 0.24.0 <pip>
zeromq 4.2.5 hfc679d8_5 conda-forge
zict 0.1.3 py_0 conda-forge
zlib 1.2.11 h470a237_3 conda-forge
Issue Analytics
- State:
- Created 5 years ago
- Comments:15
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Thanks a lot for the table. Those times are definitely not ideal… will do some more extensive testing to figure out where the bottleneck is when I have the chance. Don’t know why my test resulted in such a smaller time difference.
Thanks @lukelbd for all this work. Looking forward to being able to jump fully to
proplotwith these faster timings!