deid identifiers --action all fails with NoneType object has no attribute get_actions
See original GitHub issueI have pulled the current master branch and tried the following:
(deid) ➜ deid git:(master) ✗ cd examples/dicom
(deid) ➜ dicom git:(master) ✗ python deid-dicom-example.py
Found 1 valid dicom files
Found 1 valid dicom files
Found 1 valid dicom files
Found 1 valid dicom files
Found 1 valid dicom files
Found 1 valid dicom files
Found 1 valid dicom files
WARNING No specification, loading default base deid.dicom
WARNING No specification, loading default base deid.dicom
WARNING No specification, loading default base deid.dicom
Traceback (most recent call last):
File "deid-dicom-example.py", line 214, in <module>
output_folder='/home/vanessa/Desktop')
File "/home/peter/code/deid/deid/dicom/header.py", line 272, in replace_identifiers
for action in deid.get_actions():
AttributeError: 'NoneType' object has no attribute 'get_actions'
Some information about my environment:
(deid) ➜ dicom git:(master) ✗ python --version
Python 3.6.2
(deid) ➜ dicom git:(master) ✗ pip list
certifi (2018.4.16)
chardet (3.0.4)
cycler (0.10.0)
deid (0.1.13, /home/peter/code/deid)
idna (2.6)
kiwisolver (1.0.1)
matplotlib (2.2.2)
numpy (1.14.3)
pip (9.0.1)
pydicom (1.0.2)
Pygments (2.2.0)
pyparsing (2.2.0)
python-dateutil (2.7.3)
pytz (2018.4)
requests (2.18.4)
retrying (1.3.3)
setuptools (28.8.0)
simplejson (3.15.0)
six (1.11.0)
urllib3 (1.22)
validator.py (1.2.5)
Any ideas what might be wrong?
Issue Analytics
- State:
- Created 5 years ago
- Comments:6 (6 by maintainers)
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Awesome! Just merged 😃 Let me know if you have any more issues, I’ll close the issue if you are resolved (reopen if needed!)
I finally got it working after looking at the code. Made a PR with some small corrections: https://github.com/pydicom/deid/pull/55