Error while installing PyTorch Scatter

📚 Installation

I am getting the error “cl : Command line error D8003 : missing source filename” while installing PyTorch Scatter. I am using the command “pip install torch-scatter -f https://pytorch-geometric.com/whl/torch-1.8.0+cpu.html”. Visual Basic along with Windows 10 SDK is already installed.

Environment

• OS: Windows 10
• Python version: 3.6.5
• PyTorch version: 1.8.1
• CUDA/cuDNN version: None
• GCC version:
• How did you try to install PyTorch Geometric and its extensions (wheel, source): wheel
• Any other relevant information:

Checklist

• I followed the installation guide.
• I cannot find my error message in the FAQ.
• I set up CUDA correctly and can compile CUDA code via nvcc.
• I do have multiple CUDA versions on my machine.

Additional context

Log details: Looking in links: https://pytorch-geometric.com/whl/torch-1.8.0+cpu.html Collecting torch-scatter Using cached torch_scatter-2.0.6.tar.gz (21 kB) Building wheels for collected packages: torch-scatter Building wheel for torch-scatter (setup.py) … error ERROR: Command errored out with exit status 1: command: ‘C:\ProgramData\Anaconda3\python.exe’ -u -c ‘import sys, setuptools, tokenize; sys.argv[0] = ‘"’“‘C:\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\setup.py’”’“‘; file=’”‘“‘C:\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\setup.py’”’“';f=getattr(tokenize, '”‘“‘open’”’“‘, open)(file);code=f.read().replace(’”‘"’\r\n’“'”‘, ‘"’"’\n’“'”‘);f.close();exec(compile(code, file, ‘"’“‘exec’”’"‘))’ bdist_wheel -d ‘C:\Users\1583548\AppData\Local\Temp\pip-wheel-gv7edt2r’ cwd: C:\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255
Complete output (44 lines): running bdist_wheel running build running build_py creating build creating build\lib.win-amd64-3.6 creating build\lib.win-amd64-3.6\torch_scatter copying torch_scatter\placeholder.py -> build\lib.win-amd64-3.6\torch_scatter copying torch_scatter\scatter.py -> build\lib.win-amd64-3.6\torch_scatter copying torch_scatter\segment_coo.py -> build\lib.win-amd64-3.6\torch_scatter copying torch_scatter\segment_csr.py -> build\lib.win-amd64-3.6\torch_scatter copying torch_scatter\utils.py -> build\lib.win-amd64-3.6\torch_scatter copying torch_scatter_init_.py -> build\lib.win-amd64-3.6\torch_scatter creating build\lib.win-amd64-3.6\torch_scatter\composite copying torch_scatter\composite\logsumexp.py -> build\lib.win-amd64-3.6\torch_scatter\composite copying torch_scatter\composite\softmax.py -> build\lib.win-amd64-3.6\torch_scatter\composite copying torch_scatter\composite\std.py -> build\lib.win-amd64-3.6\torch_scatter\composite copying torch_scatter\composite_init_.py -> build\lib.win-amd64-3.6\torch_scatter\composite running build_ext C:\ProgramData\Anaconda3\lib\site-packages\torch\utils\cpp_extension.py:304: UserWarning: Error checking compiler version for cl: [WinError 2] The system cannot find the file specified warnings.warn(f’Error checking compiler version for {compiler}: {error}') building ‘torch_scatter._scatter_cpu’ extension creating build\temp.win-amd64-3.6 creating build\temp.win-amd64-3.6\Release creating build\temp.win-amd64-3.6\Release\Users creating build\temp.win-amd64-3.6\Release\Users\1583548 creating build\temp.win-amd64-3.6\Release\Users\1583548\AppData creating build\temp.win-amd64-3.6\Release\Users\1583548\AppData\Local creating build\temp.win-amd64-3.6\Release\Users\1583548\AppData\Local\Temp creating build\temp.win-amd64-3.6\Release\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp creating build\temp.win-amd64-3.6\Release\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255 creating build\temp.win-amd64-3.6\Release\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\csrc creating build\temp.win-amd64-3.6\Release\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\csrc\cpu C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.28.29910\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MT -IC:\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\csrc -IC:\ProgramData\Anaconda3\lib\site-packages\torch\include -IC:\ProgramData\Anaconda3\lib\site-packages\torch\include\torch\csrc\api\include -IC:\ProgramData\Anaconda3\lib\site-packages\torch\include\TH -IC:\ProgramData\Anaconda3\lib\site-packages\torch\include\THC -IC:\ProgramData\Anaconda3\include -IC:\ProgramData\Anaconda3\include “-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.28.29910\ATLMFC\include” “-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.28.29910\include” "-IC:\Program Files (x86)\Windows Kits\10" /EHsc /TpC:\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\csrc\scatter.cpp /Fobuild\temp.win-amd64-3.6\Release\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\csrc\scatter.obj /MD /wd4819 /wd4251 /wd4244 /wd4267 /wd4275 /wd4018 /wd4190 /EHsc -O2 -DAT_PARALLEL_OPENMP /openmp -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=_scatter_cpu -D_GLIBCXX_USE_CXX11_ABI=0 cl : Command line error D8003 : missing source filename error: command ‘C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.28.29910\bin\HostX86\x64\cl.exe’ failed with exit status 2 Error in atexit._run_exitfuncs: Traceback (most recent call last): File “C:\ProgramData\Anaconda3\lib\site-packages\colorama\initialise.py”, line 20, in reset_all AnsiToWin32(orig_stdout).reset_all() File “C:\ProgramData\Anaconda3\lib\site-packages\colorama\ansitowin32.py”, line 71, in init strip = conversion_supported or (not is_stream_closed(wrapped) and not is_a_tty(wrapped)) File “C:\ProgramData\Anaconda3\lib\site-packages\colorama\ansitowin32.py”, line 17, in is_stream_closed return not hasattr(stream, ‘closed’) or stream.closed ValueError: underlying buffer has been detached

ERROR: Failed building wheel for torch-scatter Running setup.py clean for torch-scatter Failed to build torch-scatter Installing collected packages: torch-scatter Running setup.py install for torch-scatter … error ERROR: Command errored out with exit status 1: command: ‘C:\ProgramData\Anaconda3\python.exe’ -u -c ‘import sys, setuptools, tokenize; sys.argv[0] = ‘"’“‘C:\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\setup.py’”’“‘; file=’”‘“‘C:\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\setup.py’”’“';f=getattr(tokenize, '”‘“‘open’”’“‘, open)(file);code=f.read().replace(’”‘"’\r\n’“'”‘, ‘"’"’\n’“'”‘);f.close();exec(compile(code, file, ‘"’“‘exec’”’“‘))’ install --record ‘C:\Users\1583548\AppData\Local\Temp\pip-record-7d0cj2dr\install-record.txt’ --single-version-externally-managed --user --prefix= --compile --install-headers ‘C:\Users\1583548\AppData\Roaming\Python\Python36\Include\torch-scatter’ cwd: C:\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255
Complete output (44 lines): running install running build running build_py creating build creating build\lib.win-amd64-3.6 creating build\lib.win-amd64-3.6\torch_scatter copying torch_scatter\placeholder.py -> build\lib.win-amd64-3.6\torch_scatter copying torch_scatter\scatter.py -> build\lib.win-amd64-3.6\torch_scatter copying torch_scatter\segment_coo.py -> build\lib.win-amd64-3.6\torch_scatter copying torch_scatter\segment_csr.py -> build\lib.win-amd64-3.6\torch_scatter copying torch_scatter\utils.py -> build\lib.win-amd64-3.6\torch_scatter copying torch_scatter_init_.py -> build\lib.win-amd64-3.6\torch_scatter creating build\lib.win-amd64-3.6\torch_scatter\composite copying torch_scatter\composite\logsumexp.py -> build\lib.win-amd64-3.6\torch_scatter\composite copying torch_scatter\composite\softmax.py -> build\lib.win-amd64-3.6\torch_scatter\composite copying torch_scatter\composite\std.py -> build\lib.win-amd64-3.6\torch_scatter\composite copying torch_scatter\composite_init_.py -> build\lib.win-amd64-3.6\torch_scatter\composite running build_ext C:\ProgramData\Anaconda3\lib\site-packages\torch\utils\cpp_extension.py:304: UserWarning: Error checking compiler version for cl: [WinError 2] The system cannot find the file specified warnings.warn(f’Error checking compiler version for {compiler}: {error}‘) building ‘torch_scatter._scatter_cpu’ extension creating build\temp.win-amd64-3.6 creating build\temp.win-amd64-3.6\Release creating build\temp.win-amd64-3.6\Release\Users creating build\temp.win-amd64-3.6\Release\Users\1583548 creating build\temp.win-amd64-3.6\Release\Users\1583548\AppData creating build\temp.win-amd64-3.6\Release\Users\1583548\AppData\Local creating build\temp.win-amd64-3.6\Release\Users\1583548\AppData\Local\Temp creating build\temp.win-amd64-3.6\Release\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp creating build\temp.win-amd64-3.6\Release\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255 creating build\temp.win-amd64-3.6\Release\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\csrc creating build\temp.win-amd64-3.6\Release\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\csrc\cpu C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.28.29910\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MT -IC:\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\csrc -IC:\ProgramData\Anaconda3\lib\site-packages\torch\include -IC:\ProgramData\Anaconda3\lib\site-packages\torch\include\torch\csrc\api\include -IC:\ProgramData\Anaconda3\lib\site-packages\torch\include\TH -IC:\ProgramData\Anaconda3\lib\site-packages\torch\include\THC -IC:\ProgramData\Anaconda3\include -IC:\ProgramData\Anaconda3\include “-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.28.29910\ATLMFC\include” “-IC:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.28.29910\include” “-IC:\Program Files (x86)\Windows Kits\10" /EHsc /TpC:\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\csrc\scatter.cpp /Fobuild\temp.win-amd64-3.6\Release\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\csrc\scatter.obj /MD /wd4819 /wd4251 /wd4244 /wd4267 /wd4275 /wd4018 /wd4190 /EHsc -O2 -DAT_PARALLEL_OPENMP /openmp -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=_scatter_cpu -D_GLIBCXX_USE_CXX11_ABI=0 cl : Command line error D8003 : missing source filename error: command ‘C:\Program Files (x86)\Microsoft Visual Studio\2019\Community\VC\Tools\MSVC\14.28.29910\bin\HostX86\x64\cl.exe’ failed with exit status 2 Error in atexit._run_exitfuncs: Traceback (most recent call last): File “C:\ProgramData\Anaconda3\lib\site-packages\colorama\initialise.py”, line 20, in reset_all AnsiToWin32(orig_stdout).reset_all() File “C:\ProgramData\Anaconda3\lib\site-packages\colorama\ansitowin32.py”, line 71, in init strip = conversion_supported or (not is_stream_closed(wrapped) and not is_a_tty(wrapped)) File “C:\ProgramData\Anaconda3\lib\site-packages\colorama\ansitowin32.py”, line 17, in is_stream_closed return not hasattr(stream, ‘closed’) or stream.closed ValueError: underlying buffer has been detached ---------------------------------------- ERROR: Command errored out with exit status 1: ‘C:\ProgramData\Anaconda3\python.exe’ -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '”’”‘C:\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\setup.py’“'”‘; file=’“'”‘C:\Users\1583548\AppData\Local\Temp\pip-install-b92l6kvp\torch-scatter_5b2264bb35584445b5cb65709b56d255\setup.py’“'”‘;f=getattr(tokenize, ‘"’“‘open’”’“‘, open)(file);code=f.read().replace(’”‘"’\r\n’“'”‘, ‘"’"’\n’“'”‘);f.close();exec(compile(code, file, ‘"’“‘exec’”’"‘))’ install --record ‘C:\Users\1583548\AppData\Local\Temp\pip-record-7d0cj2dr\install-record.txt’ --single-version-externally-managed --user --prefix= --compile --install-headers ‘C:\Users\1583548\AppData\Roaming\Python\Python36\Include\torch-scatter’ Check the logs for full command output.

[rusty1s]

Can you try to install via:

pip install --no-index torch-scatter -f https://pytorch-geometric.com/whl/torch-1.8.0+cpu.html

[rusty1s]

Sorry to hear. Does this link work for you? https://s3.eu-central-1.amazonaws.com/pytorch-geometric.com/whl/torch-1.8.0%2Bcpu/torch_scatter-2.0.6-cp36-cp36m-win_amd64.whl