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Failed to install packages error - possibly due to pets4py package

See original GitHub issue

Bug description

Getting pip_audit._virtual_env.VirtualEnvError: Failed to install packages error when running pip-audit on a requirements file. Appears to be something with the petsc4py package.

Reproduction steps

Run pip-audit -r ./requirements.txt using the attached requirements file

Expected behavior

I expected no exceptions and an audit report.

Screenshots and logs

No screenshots but logs:

DEBUG:pip_audit._cli:parsed arguments: Namespace(cache_dir=None, desc=<VulnerabilityDescriptionChoice.Auto: 'auto'>, dry_run=False, format=<OutputFormatChoice.Columns: 'columns'>, local=False, progress_spinner=<ProgressSpinnerChoice.On: 'on'>, requirements=[<_io.TextIOWrapper name='./requirements.txt' mode='r' encoding='UTF-8'>], strict=False, timeout=15, vulnerability_service=<VulnerabilityServiceChoice.Pypi: 'pypi'>)
\ Installing package in isolated environment
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Traceback (most recent call last):
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/pip_audit/_virtual_env.py", line 90, in post_setup
    subprocess.run(
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/subprocess.py", line 512, in run
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['/var/folders/1r/4gh355fx68ldr7pwx1b97gd00000gp/T/tmprjk3og48/bin/python', '-m', 'pip', 'install', '-e', '/var/folders/1r/4gh355fx68ldr7pwx1b97gd00000gp/T/tmptrbboqps/petsc4py-3.13.0']' returned non-zero exit status 1.

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/Users/hschilli/anaconda/envs/py38mpi4/bin/pip-audit", line 8, in <module>
    sys.exit(audit())
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/pip_audit/_cli.py", line 242, in audit
    for (spec, vulns) in auditor.audit(source):
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/pip_audit/_audit.py", line 60, in audit
    yield from self._service.query_all(specs)
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/pip_audit/_service/interface.py", line 115, in query_all
    for spec in specs:
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/pip_audit/_dependency_source/requirement.py", line 63, in collect
    for _, deps in self.resolver.resolve_all(iter(req_values)):
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/pip_audit/_dependency_source/interface.py", line 67, in resolve_all
    yield (req, self.resolve(req))
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/pip_audit/_dependency_source/resolvelib/resolvelib.py", line 44, in resolve
    result = self.resolver.resolve([req])
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/resolvelib/resolvers.py", line 481, in resolve
    state = resolution.resolve(requirements, max_rounds=max_rounds)
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/resolvelib/resolvers.py", line 373, in resolve
    failure_causes = self._attempt_to_pin_criterion(name)
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/resolvelib/resolvers.py", line 213, in _attempt_to_pin_criterion
    criteria = self._get_updated_criteria(candidate)
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/resolvelib/resolvers.py", line 203, in _get_updated_criteria
    for requirement in self._p.get_dependencies(candidate=candidate):
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/pip_audit/_dependency_source/resolvelib/pypi_provider.py", line 295, in get_dependencies
    return candidate.dependencies
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/pip_audit/_dependency_source/resolvelib/pypi_provider.py", line 112, in dependencies
    self._dependencies = list(self._get_dependencies())
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/pip_audit/_dependency_source/resolvelib/pypi_provider.py", line 94, in _get_dependencies
    deps: List[str] = self.metadata.get_all("Requires-Dist", [])
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/pip_audit/_dependency_source/resolvelib/pypi_provider.py", line 87, in metadata
    self._metadata = self._get_metadata_for_sdist()
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/pip_audit/_dependency_source/resolvelib/pypi_provider.py", line 170, in _get_metadata_for_sdist
    ve.create(ve_dir)
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/venv/__init__.py", line 71, in create
    self.post_setup(context)
  File "/Users/hschilli/anaconda/envs/py38mpi4/lib/python3.8/site-packages/pip_audit/_virtual_env.py", line 97, in post_setup
    raise VirtualEnvError(f"Failed to install packages: {package_install_cmd}") from cpe
pip_audit._virtual_env.VirtualEnvError: Failed to install packages: ['/var/folders/1r/4gh355fx68ldr7pwx1b97gd00000gp/T/tmprjk3og48/bin/python', '-m', 'pip', 'install', '-e', '/var/folders/1r/4gh355fx68ldr7pwx1b97gd00000gp/T/tmptrbboqps/petsc4py-3.13.0']

Platform information

  • OS name and version: macOS Big Sur 11.6.1
  • pip-audit version (pip-audit -V): pip-audit 1.0.1
  • Python version (python -V or python3 -V): Python 3.8.5
  • pip version (pip -V or pip3 -V): pip 21.2.4

Additional context

NA

Issue Analytics

  • State:closed
  • Created 2 years ago
  • Comments:6 (5 by maintainers)

github_iconTop GitHub Comments

1reaction
hschillingcommented, Dec 6, 2021

I tried installing from GitHub but, unfortunately, I got the same error.

0reactions
woodruffwcommented, May 12, 2022

Closing because #190 tracks the issue on our side.

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