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Locking package dependencies raises pexpect.exceptions.TIMEOUT

See original GitHub issue

Issue description

Pipenv times out locking package dependencies.

Expected result

I expected a new Pipenv.lock file after installing new packages.

Actual result

After 16m 2s, the command exits with an exception:

Installing geopandas…
Adding geopandas to Pipfile's [packages]…
✔ Installation Succeeded
Installing shapely…
Adding shapely to Pipfile's [packages]…
✔ Installation Succeeded
Pipfile.lock (a559de) out of date, updating to (44a6ff)…
Locking [dev-packages] dependencies…
Locking [packages] dependencies…
Traceback (most recent call last):
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/vendor/pexpect/expect.py", line 109, in expect_loop
    return self.timeout()
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/vendor/pexpect/expect.py", line 82, in timeout
    raise TIMEOUT(msg)
pexpect.exceptions.TIMEOUT: <pexpect.popen_spawn.PopenSpawn object at 0x1056c3550>
searcher: searcher_re:
    0: re.compile('\n')

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/bin/pipenv", line 11, in <module>
    load_entry_point('pipenv==2018.11.26', 'console_scripts', 'pipenv')()
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 764, in __call__
    return self.main(*args, **kwargs)
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 717, in main
    rv = self.invoke(ctx)
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 1137, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 956, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 555, in invoke
    return callback(*args, **kwargs)
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/vendor/click/decorators.py", line 64, in new_func
    return ctx.invoke(f, obj, *args, **kwargs)
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 555, in invoke
    return callback(*args, **kwargs)
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/vendor/click/decorators.py", line 17, in new_func
    return f(get_current_context(), *args, **kwargs)
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/cli/command.py", line 254, in install
    editable_packages=state.installstate.editables,
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/core.py", line 1992, in do_install
    skip_lock=skip_lock,
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/core.py", line 1221, in do_init
    pypi_mirror=pypi_mirror,
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/core.py", line 1068, in do_lock
    lockfile=lockfile
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/utils.py", line 649, in venv_resolve_deps
    c = resolve(cmd, sp)
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/utils.py", line 517, in resolve
    result = c.expect(u"\n", timeout=environments.PIPENV_INSTALL_TIMEOUT)
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/vendor/delegator.py", line 215, in expect
    self.subprocess.expect(pattern=pattern, timeout=timeout)
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/vendor/pexpect/spawnbase.py", line 341, in expect
    timeout, searchwindowsize, async_)
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/vendor/pexpect/spawnbase.py", line 369, in expect_list
    return exp.expect_loop(timeout)
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/vendor/pexpect/expect.py", line 119, in expect_loop
    return self.timeout(e)
  File "/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv/vendor/pexpect/expect.py", line 82, in timeout
    raise TIMEOUT(msg)
pexpect.exceptions.TIMEOUT: <pexpect.popen_spawn.PopenSpawn object at 0x1056c3550>
searcher: searcher_re:
    0: re.compile('\n')
<pexpect.popen_spawn.PopenSpawn object at 0x1056c3550>
searcher: searcher_re:
    0: re.compile('\n')

Steps to replicate

In an existing project I ran:

➜ pipenv install geopandas shapely

Is there anything else I can do? Can I see what is going on while locking to find out the cause of the timeout? What process is running here that takes longer than expected?

I should add that I am on a somewhat good Internet connection.

$ pipenv --support

Pipenv version: '2018.11.26'

Pipenv location: '/usr/local/Cellar/pipenv/2018.11.26_2/libexec/lib/python3.7/site-packages/pipenv'

Python location: '/usr/local/Cellar/pipenv/2018.11.26_2/libexec/bin/python3.7'

Python installations found:

  • 3.7.3: /usr/local/bin/python3
  • 3.7.3: /usr/local/bin/python3.7m
  • 3.7.2: /Users/werner/.pyenv/versions/3.7.2/bin/python3
  • 3.7.2: /Users/werner/.pyenv/versions/3.7.2/bin/python3.7m
  • 3.6.8: /Users/werner/.pyenv/versions/3.6.8/bin/python3
  • 3.6.8: /Users/werner/.pyenv/versions/3.6.8/bin/python3.6m
  • 3.6.5: /Users/werner/.pyenv/versions/3.6.5/bin/python3
  • 3.6.5: /Users/werner/.pyenv/versions/3.6.5/bin/python3.6m
  • 2.7.16: /usr/local/bin/python
  • 2.7.16: /usr/local/bin/pythonw
  • 2.7.13: /usr/local/bin/pypy
  • 2.7.10: /usr/bin/python
  • 2.7.10: /usr/bin/pythonw
  • 2.7.10: /usr/bin/python2.7

PEP 508 Information:

{'implementation_name': 'cpython',
 'implementation_version': '3.7.3',
 'os_name': 'posix',
 'platform_machine': 'x86_64',
 'platform_python_implementation': 'CPython',
 'platform_release': '18.5.0',
 'platform_system': 'Darwin',
 'platform_version': 'Darwin Kernel Version 18.5.0: Mon Mar 11 20:40:32 PDT '
                     '2019; root:xnu-4903.251.3~3/RELEASE_X86_64',
 'python_full_version': '3.7.3',
 'python_version': '3.7',
 'sys_platform': 'darwin'}

System environment variables:

  • PATH
  • AUTOJUMP_ERROR_PATH
  • SPACESHIP_VERSION
  • TERM_PROGRAM
  • AUTOJUMP_SOURCED
  • TERM
  • SHELL
  • CLICOLOR
  • SAVEHIST
  • HISTSIZE
  • TMPDIR
  • Apple_PubSub_Socket_Render
  • TERM_PROGRAM_VERSION
  • TF_SHELL
  • TERM_SESSION_ID
  • LC_ALL
  • TF_ALIAS
  • TF_SHELL_ALIASES
  • PYTHONIOENCODING
  • USER
  • LS_COLORS
  • SSH_AUTH_SOCK
  • __CF_USER_TEXT_ENCODING
  • VIRTUAL_ENV_DISABLE_PROMPT
  • PAGER
  • LSCOLORS
  • _
  • PWD
  • EDITOR
  • LANG
  • TASTE_API_KEY
  • ITERM_PROFILE
  • XPC_FLAGS
  • RBENV_SHELL
  • SPACESHIP_ROOT
  • XPC_SERVICE_NAME
  • PYENV_SHELL
  • SHLVL
  • HOME
  • COLORFGBG
  • ITERM_SESSION_ID
  • LESS
  • LOGNAME
  • LC_CTYPE
  • LESSOPEN
  • DISPLAY
  • SECURITYSESSIONID
  • HISTFILE
  • COLORTERM
  • PIP_DISABLE_PIP_VERSION_CHECK
  • PYTHONDONTWRITEBYTECODE
  • PIP_SHIMS_BASE_MODULE
  • PIP_PYTHON_PATH
  • PYTHONFINDER_IGNORE_UNSUPPORTED

Pipenv–specific environment variables:

Debug–specific environment variables:

  • PATH: /usr/local/Cellar/pipenv/2018.11.26_2/libexec/tools:/Users/werner/.pyenv/shims:/Library/TeX/texbin:/Users/werner/.rbenv/shims:/usr/local/bin:/usr/local/sbin:/usr/texbin:/usr/bin:/usr/sbin:/bin:/sbin:/Users/werner/bin:/Users/werner/Documents/Binaries:/usr/local/opt/fzf/bin
  • SHELL: /bin/zsh
  • EDITOR: vim
  • LANG: en_US.UTF-8
  • PWD: /Users/werner/Documents/Projects/

Contents of Pipfile (‘/Users/werner/Documents/Projects/Pipfile’):

[[source]]
url = "https://pypi.python.org/simple"
verify_ssl = true
name = "pypi"

[packages]
numpy = "*"
scipy = "*"
matplotlib = "*"
seaborn = "*"
pandas = "*"
pymysql = "*"
python-dotenv = "*"
tqdm = "*"
pyyaml = "*"
pip = "*"
sqlalchemy = "*"
"beautifulsoup4" = "*"
requests = "*"
codeintel = "*"
"flake8" = "*"
"bs4" = "*"
elasticsearch = "*"
black = "*"
swifter = "*"
dask = {extras = ["complete"]}
pysftp = "*"
transitions = "*"
csvkit = "*"
geopandas = "*"
shapely = "*"

[dev-packages]

[requires]
python_version = "3.6"

[pipenv]
allow_prereleases = true

Contents of Pipfile.lock (‘/Users/werner/Documents/Projects/Pipfile.lock’):

{
    "_meta": {
        "hash": {
            "sha256": "b19056231e851d83dd7dd13f9334489e8700d7a3d045b635b530a988ab44a6ff"
        },
        "pipfile-spec": 6,
        "requires": {
            "python_version": "3.6"
        },
        "sources": [
            {
                "name": "pypi",
                "url": "https://pypi.python.org/simple",
                "verify_ssl": true
            }
        ]
    },
    "default": {
        "3to2": {
            "hashes": [
                "sha256:fef50b2b881ef743f269946e1090b77567b71bb9a9ce64b7f8e699b562ff685c"
            ],
            "version": "==1.1.1"
        },
        "agate": {
            "hashes": [
                "sha256:48d6f80b35611c1ba25a642cbc5b90fcbdeeb2a54711c4a8d062ee2809334d1c",
                "sha256:c93aaa500b439d71e4a5cf088d0006d2ce2c76f1950960c8843114e5f361dfd3"
            ],
            "version": "==1.6.1"
        },
        "agate-dbf": {
            "hashes": [
                "sha256:0666c1ad06cd4b2860351cebbd88bd4b05b2d1abd41b25cf91f8f6715035735e",
                "sha256:e445f17ebd0ab31cd0c2d086d79e95d9924deb251f733ea283161e3c8181333c"
            ],
            "version": "==0.2.0"
        },
        "agate-excel": {
            "hashes": [
                "sha256:8923f71ee2b5b7b21e52fb314a769b28fb902f647534f5cbbb41991d8710f4c7"
            ],
            "version": "==0.2.2"
        },
        "agate-sql": {
            "hashes": [
                "sha256:877b7b85adb5f0325455bba8d50a1623fa32af33680b554feca7c756a15ad9b4"
            ],
            "version": "==0.5.3"
        },
        "appdirs": {
            "hashes": [
                "sha256:9e5896d1372858f8dd3344faf4e5014d21849c756c8d5701f78f8a103b372d92",
                "sha256:d8b24664561d0d34ddfaec54636d502d7cea6e29c3eaf68f3df6180863e2166e"
            ],
            "version": "==1.4.3"
        },
        "applib": {
            "hashes": [
                "sha256:735a4c2104d652d41048219581a8aa0c00b95ab5316730bda8a7d46235aaf824"
            ],
            "version": "==1.2"
        },
        "asn1crypto": {
            "hashes": [
                "sha256:2f1adbb7546ed199e3c90ef23ec95c5cf3585bac7d11fb7eb562a3fe89c64e87",
                "sha256:9d5c20441baf0cb60a4ac34cc447c6c189024b6b4c6cd7877034f4965c464e49"
            ],
            "version": "==0.24.0"
        },
        "attrs": {
            "hashes": [
                "sha256:10cbf6e27dbce8c30807caf056c8eb50917e0eaafe86347671b57254006c3e69",
                "sha256:ca4be454458f9dec299268d472aaa5a11f67a4ff70093396e1ceae9c76cf4bbb"
            ],
            "version": "==18.2.0"
        },
        "babel": {
            "hashes": [
                "sha256:6778d85147d5d85345c14a26aada5e478ab04e39b078b0745ee6870c2b5cf669",
                "sha256:8cba50f48c529ca3fa18cf81fa9403be176d374ac4d60738b839122dfaaa3d23"
            ],
            "version": "==2.6.0"
        },
        "bcrypt": {
            "hashes": [
                "sha256:0ba875eb67b011add6d8c5b76afbd92166e98b1f1efab9433d5dc0fafc76e203",
                "sha256:21ed446054c93e209434148ef0b362432bb82bbdaf7beef70a32c221f3e33d1c",
                "sha256:28a0459381a8021f57230954b9e9a65bb5e3d569d2c253c5cac6cb181d71cf23",
                "sha256:2aed3091eb6f51c26b7c2fad08d6620d1c35839e7a362f706015b41bd991125e",
                "sha256:2fa5d1e438958ea90eaedbf8082c2ceb1a684b4f6c75a3800c6ec1e18ebef96f",
                "sha256:3a73f45484e9874252002793518da060fb11eaa76c30713faa12115db17d1430",
                "sha256:3e489787638a36bb466cd66780e15715494b6d6905ffdbaede94440d6d8e7dba",
                "sha256:44636759d222baa62806bbceb20e96f75a015a6381690d1bc2eda91c01ec02ea",
                "sha256:678c21b2fecaa72a1eded0cf12351b153615520637efcadc09ecf81b871f1596",
                "sha256:75460c2c3786977ea9768d6c9d8957ba31b5fbeb0aae67a5c0e96aab4155f18c",
                "sha256:8ac06fb3e6aacb0a95b56eba735c0b64df49651c6ceb1ad1cf01ba75070d567f",
                "sha256:8fdced50a8b646fff8fa0e4b1c5fd940ecc844b43d1da5a980cb07f2d1b1132f",
                "sha256:9b2c5b640a2da533b0ab5f148d87fb9989bf9bcb2e61eea6a729102a6d36aef9",
                "sha256:a9083e7fa9adb1a4de5ac15f9097eb15b04e2c8f97618f1b881af40abce382e1",
                "sha256:b7e3948b8b1a81c5a99d41da5fb2dc03ddb93b5f96fcd3fd27e643f91efa33e1",
                "sha256:b998b8ca979d906085f6a5d84f7b5459e5e94a13fc27c28a3514437013b6c2f6",
                "sha256:dd08c50bc6f7be69cd7ba0769acca28c846ec46b7a8ddc2acf4b9ac6f8a7457e",
                "sha256:de5badee458544ab8125e63e39afeedfcf3aef6a6e2282ac159c95ae7472d773",
                "sha256:ede2a87333d24f55a4a7338a6ccdccf3eaa9bed081d1737e0db4dbd1a4f7e6b6"
            ],
            "version": "==3.1.6"
        },
        "beautifulsoup4": {
            "hashes": [
                "sha256:034740f6cb549b4e932ae1ab975581e6103ac8f942200a0e9759065984391858",
                "sha256:945065979fb8529dd2f37dbb58f00b661bdbcbebf954f93b32fdf5263ef35348",
                "sha256:ba6d5c59906a85ac23dadfe5c88deaf3e179ef565f4898671253e50a78680718"
            ],
            "index": "pypi",
            "version": "==4.7.1"
        },
        "black": {
            "hashes": [
                "sha256:817243426042db1d36617910df579a54f1afd659adb96fc5032fcf4b36209739",
                "sha256:e030a9a28f542debc08acceb273f228ac422798e5215ba2a791a6ddeaaca22a5"
            ],
            "index": "pypi",
            "version": "==18.9b0"
        },
        "bs4": {
            "hashes": [
                "sha256:36ecea1fd7cc5c0c6e4a1ff075df26d50da647b75376626cc186e2212886dd3a"
            ],
            "index": "pypi",
            "version": "==0.0.1"
        },
        "certifi": {
            "hashes": [
                "sha256:47f9c83ef4c0c621eaef743f133f09fa8a74a9b75f037e8624f83bd1b6626cb7",
                "sha256:993f830721089fef441cdfeb4b2c8c9df86f0c63239f06bd025a76a7daddb033"
            ],
            "version": "==2018.11.29"
        },
        "cffi": {
            "hashes": [
                "sha256:0b5f895714a7a9905148fc51978c62e8a6cbcace30904d39dcd0d9e2265bb2f6",
                "sha256:27cdc7ba35ee6aa443271d11583b50815c4bb52be89a909d0028e86c21961709",
                "sha256:2d4a38049ea93d5ce3c7659210393524c1efc3efafa151bd85d196fa98fce50a",
                "sha256:3262573d0d60fc6b9d0e0e6e666db0e5045cbe8a531779aa0deb3b425ec5a282",
                "sha256:358e96cfffc185ab8f6e7e425c7bb028931ed08d65402fbcf3f4e1bff6e66556",
                "sha256:37c7db824b5687fbd7ea5519acfd054c905951acc53503547c86be3db0580134",
                "sha256:39b9554dfe60f878e0c6ff8a460708db6e1b1c9cc6da2c74df2955adf83e355d",
                "sha256:42b96a77acf8b2d06821600fa87c208046decc13bd22a4a0e65c5c973443e0da",
                "sha256:5b37dde5035d3c219324cac0e69d96495970977f310b306fa2df5910e1f329a1",
                "sha256:5d35819f5566d0dd254f273d60cf4a2dcdd3ae3003dfd412d40b3fe8ffd87509",
                "sha256:5df73aa465e53549bd03c819c1bc69fb85529a5e1a693b7b6cb64408dd3970d1",
                "sha256:7075b361f7a4d0d4165439992d0b8a3cdfad1f302bf246ed9308a2e33b046bd3",
                "sha256:7678b5a667b0381c173abe530d7bdb0e6e3b98e062490618f04b80ca62686d96",
                "sha256:7dfd996192ff8a535458c17f22ff5eb78b83504c34d10eefac0c77b1322609e2",
                "sha256:8a3be5d31d02c60f84c4fd4c98c5e3a97b49f32e16861367f67c49425f955b28",
                "sha256:9812e53369c469506b123aee9dcb56d50c82fad60c5df87feb5ff59af5b5f55c",
                "sha256:9b6f7ba4e78c52c1a291d0c0c0bd745d19adde1a9e1c03cb899f0c6efd6f8033",
                "sha256:a85bc1d7c3bba89b3d8c892bc0458de504f8b3bcca18892e6ed15b5f7a52ad9d",
                "sha256:aa6b9c843ad645ebb12616de848cc4e25a40f633ccc293c3c9fe34107c02c2ea",
                "sha256:bae1aa56ee00746798beafe486daa7cfb586cd395c6ce822ba3068e48d761bc0",
                "sha256:bae96e26510e4825d5910a196bf6b5a11a18b87d9278db6d08413be8ea799469",
                "sha256:bd78df3b594013b227bf31d0301566dc50ba6f40df38a70ded731d5a8f2cb071",
                "sha256:c2711197154f46d06f73542c539a0ff5411f1951fab391e0a4ac8359badef719",
                "sha256:d998c20e3deed234fca993fd6c8314cb7cbfda05fd170f1bd75bb5d7421c3c5a",
                "sha256:df4f840d77d9e37136f8e6b432fecc9d6b8730f18f896e90628712c793466ce6",
                "sha256:f5653c2581acb038319e6705d4e3593677676df14b112f13e0b5b44b6a18df1a",
                "sha256:f7c7aa485a2e2250d455148470ffd0195eecc3d845122635202d7467d6f7b4cf",
                "sha256:f9e2c66a6493147de835f207f198540a56b26745ce4f272fbc7c2f2cfebeb729"
            ],
            "version": "==1.12.1"
        },
        "chardet": {
            "hashes": [
                "sha256:84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae",
                "sha256:fc323ffcaeaed0e0a02bf4d117757b98aed530d9ed4531e3e15460124c106691"
            ],
            "version": "==3.0.4"
        },
        "click": {
            "hashes": [
                "sha256:2335065e6395b9e67ca716de5f7526736bfa6ceead690adf616d925bdc622b13",
                "sha256:5b94b49521f6456670fdb30cd82a4eca9412788a93fa6dd6df72c94d5a8ff2d7"
            ],
            "version": "==7.0"
        },
        "cloudpickle": {
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}

Issue Analytics

  • State:closed
  • Created 4 years ago
  • Reactions:21
  • Comments:38 (5 by maintainers)

github_iconTop GitHub Comments

12reactions
Palisandcommented, Jul 1, 2020

Please reopen.

10reactions
dhostermancommented, May 21, 2019

I resolved this on my machine by manually deleting my pip and pipenv caches entirely (~/Library/Caches/pip and ~/Library/Caches/pipenv) and it worked immediately afterward.

This worked where pipenv --clear did not.

I still have no idea what caused the issue, but it seems related to your problem and I just had to perform a more comprehensive cleaning of the cache.

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