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pipenv install --selective-upgrade upgrades package it's not supposed to
See original GitHub issueHi
I think this looks like a bug, but I would like to learn how to debug this. I’m trying to install a new package (with dependencies) into my current environment, minimizing the amounts of upgrades.
I’m doing this:
pipenv install --keep-outdated --selective-upgrade cellrank
and this results in incompatible versions:
There are incompatible versions in the resolved dependencies:
tensorboard<1.16.0,>=1.15.0 (from tensorflow==1.15->scgen==1.1.5->-r /tmp/pipenvlt9kuaxwrequirements/pipenv-21k5ptmh-constraints.txt (line 7))
tensorboard>=2.2.0 (from pytorch-lightning==1.2.3->scvi-tools==0.9.0->-r /tmp/pipenvlt9kuaxwrequirements/pipenv-21k5ptmh-constraints.txt (line 12))
However, the current installed version of scvi-tools is 0.8.1 and if I fix (pin) that version in Pipfile, then everything works.
I think it’s supposed to work with selective-upgrade option as well, without fixing the version in the Pipfile
$ pipenv --support
Pipenv version: '2020.11.15'
Pipenv location: '/home/nmx5063/.local/lib/python3.7/site-packages/pipenv'
Python location: '/software/python-anaconda3/2019.10/bin/python'
Python installations found:
3.6.9:/projects/b1038/tools/pyenv/versions/3.6.9/bin/python33.6.8:/usr/bin/python33.6.8:/usr/bin/python3.63.6.8:/usr/bin/python3.6m2.7.5:/usr/bin/python22.7.5:/usr/bin/python2.7
PEP 508 Information:
{'implementation_name': 'cpython',
'implementation_version': '3.7.4',
'os_name': 'posix',
'platform_machine': 'x86_64',
'platform_python_implementation': 'CPython',
'platform_release': '3.10.0-862.el7.x86_64',
'platform_system': 'Linux',
'platform_version': '#1 SMP Wed Mar 21 18:14:51 EDT 2018',
'python_full_version': '3.7.4',
'python_version': '3.7',
'sys_platform': 'linux'}
System environment variables:
XDG_SESSION_IDHOSTNAMEPYENV_ROOT__LMOD_REF_COUNT_MODULEPATHSHELLTERMHISTSIZESSH_CLIENTMODULEPATH_ROOTPIPENV_VENV_IN_PROJECTLMOD_PACKAGE_PATHLMOD_PKGOLDPWDQTDIRQTINCLMOD_VERSIONLMOD_ADMIN_FILESSH_TTYLC_ALLQT_GRAPHICSSYSTEM_CHECKEDUSERLS_COLORSTIMEFORMATSSH_AUTH_SOCKTERMCAPBASH_MYENVPYENV_VIRTUALENV_INITPAGERLSCOLORS_ModuleTable001_PATHMAILSTYPWDEDITORLANGLMOD_PAGERMODULEPATH_ModuleTable_Sz_KDEDIRSCLOUDSDK_PYTHONLMOD_CMDHISTIGNOREHISTCONTROLSSH_ASKPASSHOMESHLVLLESSCHARSETPYENV_SHELL__LMOD_REF_COUNT_PATH_ModuleTable002_LOGNAMECVS_RSHQTLIBWINDOWLC_CTYPESSH_CONNECTIONXDG_DATA_DIRSMODULESHOMELESSOPENLMOD_SETTARG_FULL_SUPPORTXDG_RUNTIME_DIRQT_PLUGIN_PATH_INIT_LMODLMOD_DIRHOSTFILEHISTTIMEFORMATBASH_FUNC_module()BASH_FUNC_ml()_PIP_DISABLE_PIP_VERSION_CHECKPYTHONDONTWRITEBYTECODEPIP_SHIMS_BASE_MODULEPIP_PYTHON_PATHPYTHONFINDER_IGNORE_UNSUPPORTED
Pipenv–specific environment variables:
PIPENV_VENV_IN_PROJECT:1
Debug–specific environment variables:
PATH:/home/nmx5063/.local/bin:/projects/b1038/Pulmonary/nmarkov/reverse-names:/projects/b1038/tools/pyenv/plugins/pyenv-virtualenv/shims:/projects/b1038/tools/pyenv/shims:/projects/b1038/tools/pyenv/bin:/hpc/slurm/northwestern/usertools:/home/nmx5063/google-cloud-sdk/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lpp/mmfs/bin:/opt/ibutils/bin:/home/nmx5063/binSHELL:/bin/bashEDITOR:vimLANG:en_US.UTF-8PWD:/projects/b1038/Pulmonary/nmarkov/ssc-v2/code
Contents of Pipfile (‘/projects/b1038/Pulmonary/nmarkov/ssc-v2/code/Pipfile’):
[[source]]
name = "pypi"
url = "https://pypi.org/simple"
verify_ssl = true
[dev-packages]
[packages]
scanpy = "*"
bbknn = "*"
ipykernel = "*"
snakemake = "*"
leidenalg = "*"
scrublet = "*"
annoy = "*"
synapseclient = "*"
scgen = "*"
scvi-tools = "*"
openpyxl = "*"
cellrank = "*"
[requires]
python_version = "3.7"
Contents of Pipfile.lock (‘/projects/b1038/Pulmonary/nmarkov/ssc-v2/code/Pipfile.lock’):
{
"_meta": {
"hash": {
"sha256": "7e56947a3abb23332c31f66e62805514b8aaae1ab7eb4ebec89630c5b05e9382"
},
"pipfile-spec": 6,
"requires": {
"python_version": "3.7"
},
"sources": [
{
"name": "pypi",
"url": "https://pypi.org/simple",
"verify_ssl": true
}
]
},
"default": {
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],
"version": "==0.11.0"
},
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},
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Issue Analytics
- State:
- Created 3 years ago
- Reactions:3
- Comments:6 (1 by maintainers)
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I just ran into the same thing with another package, so commenting again.
Seems like I found the thread: https://github.com/pypa/pipenv/issues/966 If I read it right, then, by default
pipenvdoes not look intoPipfile.lockwhen resolving dependencies afterinstall, and so if a new version is available for some dependency and it’s not constrained in thePipfilethen it would get intoPipfile.lockSince comments there are closed, but the issue still open, I wonder: — is work on that issue still in progress? — or is the recommendation to pin everything we need not changed in
Pipfile? — or is the recommendation to use passa? https://github.com/sarugaku/passa@techalchemy if you have time, I would be grateful if you comment if my reading of the situation is correct and what are plans regarding that as of now?
@mxposed and @dvemnt Can you retest with pipenv '2022.1.8`?