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Syncing virtualenv installed packages with Pipfile

See original GitHub issue

I am using PyCharm for development and have run into issues with their integration of pipenv when using a pyenv-installed interpreter. As a result, I am using the virtualenv created by pipenv directly as well as specifying my interpreter directly in order to install packages when I am operating within PyCharm.

If I install packages this way, they go into the virtualenv’s site-packages directory, but they do not update my Pipfile or Pipfile.lock. This makes sense, since it is bypassing the use of pipenv to install these packages.

However, is there a way to sync the existing packages within my virtualenv to my Pipfile.lock? Ideally, I could also sync my Pipfile, although I could see that being more complicated without having the exact command used to install these packages available (updating Pipfile manually is manageable in my case).

$ pipenv --support

Pipenv version: '2018.11.26'

Pipenv location: '/Users/birnbera/.pyenv/versions/pypy3.6-7.1.0/site-packages/pipenv'

Python location: '/Users/birnbera/.pyenv/versions/pypy3.6-7.1.0/bin/python'

Python installations found:

3.6.8: /Users/birnbera/miniconda3/bin/python3
3.6.5: /Users/birnbera/miniconda3/bin/pythonw
3.6.1: /Users/birnbera/.pyenv/versions/pypy3.6-7.1.0/bin/python
2.7.15: /usr/local/bin/python
2.7.15: /usr/local/bin/pythonw
2.7.10: /usr/bin/python
2.7.10: /usr/bin/pythonw
2.7.10: /usr/bin/python2.7

PEP 508 Information:

{'implementation_name': 'pypy',
 'implementation_version': '3.6.1',
 'os_name': 'posix',
 'platform_machine': 'x86_64',
 'platform_python_implementation': 'PyPy',
 'platform_release': '17.7.0',
 'platform_system': 'Darwin',
 'platform_version': 'Darwin Kernel Version 17.7.0: Wed Feb 27 00:43:23 PST '
                     '2019; root:xnu-4570.71.35~1/RELEASE_X86_64',
 'python_full_version': '3.6.1',
 'python_version': '3.6',
 'sys_platform': 'darwin'}

System environment variables:

TERM_PROGRAM
PYENV_ROOT
SHELL
TERM
TMPDIR
Apple_PubSub_Socket_Render
TERM_PROGRAM_VERSION
TERM_SESSION_ID
PYENV_VERSION
USER
SSH_AUTH_SOCK
PYENV_DIR
PATH
PWD
LANG
PYENV_HOOK_PATH
XPC_FLAGS
XPC_SERVICE_NAME
SHLVL
HOME
PYENV_SHELL
LOGNAME
DISPLAY
SECURITYSESSIONID
PIP_DISABLE_PIP_VERSION_CHECK
PYTHONDONTWRITEBYTECODE
PIP_SHIMS_BASE_MODULE
PIP_PYTHON_PATH
PYTHONFINDER_IGNORE_UNSUPPORTED

Pipenv–specific environment variables:

Debug–specific environment variables:

PATH: /Users/birnbera/.pyenv/versions/pypy3.6-7.1.0/bin:/usr/local/Cellar/pyenv/1.2.11/libexec:/Users/birnbera/.pyenv/shims:/usr/local/opt/mysql@5.7/bin:/Users/birnbera/miniconda3/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin
SHELL: /bin/bash
LANG: en_US.UTF-8
PWD: /Users/birnbera/Projects/poser

Contents of Pipfile (‘/Users/birnbera/Projects/poser/Pipfile’):

[[source]]
name = "pypi"
url = "https://pypi.org/simple"
verify_ssl = true

[dev-packages]
pycycle = "*"
requests = "*"

[packages]
sqlalchemy = "*"
alembic = "*"
black = "*"
pandas = "*"
pyramid = "*"
cx-oracle = "*"
cornice = "*"
pymysql = "*"

[requires]
python_version = "3.6"

[pipenv]
allow_prereleases = true

Contents of Pipfile.lock (‘/Users/birnbera/Projects/poser/Pipfile.lock’):

{
    "_meta": {
        "hash": {
            "sha256": "5f90b5b38129e56adb9581d3a84c19634c3396fffa373d1b4b9e9ded654d64c7"
        },
        "pipfile-spec": 6,
        "requires": {
            "python_version": "3.6"
        },
        "sources": [
            {
                "name": "pypi",
                "url": "https://pypi.org/simple",
                "verify_ssl": true
            }
        ]
    },
    "default": {
        "alembic": {
            "hashes": [
                "sha256:828dcaa922155a2b7166c4f36ec45268944e4055c86499bd14319b4c8c0094b7"
            ],
            "index": "pypi",
            "version": "==1.0.10"
        },
        "appdirs": {
            "hashes": [
                "sha256:9e5896d1372858f8dd3344faf4e5014d21849c756c8d5701f78f8a103b372d92",
                "sha256:d8b24664561d0d34ddfaec54636d502d7cea6e29c3eaf68f3df6180863e2166e"
            ],
            "version": "==1.4.3"
        },
        "attrs": {
            "hashes": [
                "sha256:69c0dbf2ed392de1cb5ec704444b08a5ef81680a61cb899dc08127123af36a79",
                "sha256:f0b870f674851ecbfbbbd364d6b5cbdff9dcedbc7f3f5e18a6891057f21fe399"
            ],
            "version": "==19.1.0"
        },
        "black": {
            "hashes": [
                "sha256:09a9dcb7c46ed496a9850b76e4e825d6049ecd38b611f1224857a79bd985a8cf",
                "sha256:68950ffd4d9169716bcb8719a56c07a2f4485354fec061cdd5910aa07369731c"
            ],
            "index": "pypi",
            "version": "==19.3b0"
        },
        "click": {
            "hashes": [
                "sha256:2335065e6395b9e67ca716de5f7526736bfa6ceead690adf616d925bdc622b13",
                "sha256:5b94b49521f6456670fdb30cd82a4eca9412788a93fa6dd6df72c94d5a8ff2d7"
            ],
            "version": "==7.0"
        },
        "cornice": {
            "hashes": [
                "sha256:e95dceaee9ce16a09564c1226977a0fe62f1399701581b59c4188f5c91a86687",
                "sha256:ee6ea5b83d0c05ef978f63ef627824e90b63a6525a47fe173bcee7680288e309"
            ],
            "index": "pypi",
            "version": "==3.5.1"
        },
        "cx-oracle": {
            "hashes": [
                "sha256:35810c6578b6fb722cedfed4eca609d75e11e415eb37682096b47c96c91911ed",
                "sha256:465422e762870f8ec9b9e4273f98790e13f9263eaeca655192fd10d4f0b12007",
                "sha256:4f26b7418e2796112f8b36338a2f9a7c07dd08df53d857e3478bb53f61dd52e4",
                "sha256:53c54aecfffcf97dc2f65ebdae0dd565f3d7a01a6e6b6f155980f4b0f4309aba",
                "sha256:53fdf25903b9a2f177b8463d257c9bbd9a15a58d25a05cc950813128bb36ffd3",
                "sha256:5bd9bf2d5c6ca20a468c033cdf35c5d651e4da5d4a3617f5a5653ab21bd06e30",
                "sha256:66b66c0c12e71f7292bed9d3a02ce085e15638f8fac11b536ee556a023b335dd",
                "sha256:761f73cd832bea333594aee6fda3fdcdd7a2525801b0a3d910faaeb2a0ee40e4",
                "sha256:9148d03e6e73b8c7566e7906ff234847b127abd0954f2df850d0d84ae0d424d1",
                "sha256:a0911b95149ddb6724eebd66b94c4df4b4dfbcd59ea7c09cf3ba7104fdc21120",
                "sha256:a4bf656546affe14df7ab1c4d7ce26e2bfc5abce5ee37fec280f22cbd821778b",
                "sha256:acaaa5cdf8ccd0526d351ef9440702f7fdf4d72f722e6761a487bcd541e45463",
                "sha256:f792412739cc0cb90ed0bca52da5284bbb2de975c24d408334cb17e33480d6cd",
                "sha256:ff5f15b7c8887afef9a970f05a3b6dc2d94d0d8e60b161c0cc6665e06d2cdf2e"
            ],
            "index": "pypi",
            "version": "==7.1.3"
        },
        "hupper": {
            "hashes": [
                "sha256:5869ec2a46ba8ad481b0a27ca68f3e01dc7d3424925b7c872d9fcdff44b43442",
                "sha256:8532d116fef1f89add74dbd8d5e6541cb3278b04f4fe9780a1356cb6adba1141"
            ],
            "version": "==1.8.1"
        },
        "mako": {
            "hashes": [
                "sha256:0cfa65de3a835e87eeca6ac856b3013aade55f49e32515f65d999f91a2324162"
            ],
            "version": "==1.0.12"
        },
        "markupsafe": {
            "hashes": [
                "sha256:00bc623926325b26bb9605ae9eae8a215691f33cae5df11ca5424f06f2d1f473",
                "sha256:09027a7803a62ca78792ad89403b1b7a73a01c8cb65909cd876f7fcebd79b161",
                "sha256:09c4b7f37d6c648cb13f9230d847adf22f8171b1ccc4d5682398e77f40309235",
                "sha256:1027c282dad077d0bae18be6794e6b6b8c91d58ed8a8d89a89d59693b9131db5",
                "sha256:24982cc2533820871eba85ba648cd53d8623687ff11cbb805be4ff7b4c971aff",
                "sha256:29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b",
                "sha256:43a55c2930bbc139570ac2452adf3d70cdbb3cfe5912c71cdce1c2c6bbd9c5d1",
                "sha256:46c99d2de99945ec5cb54f23c8cd5689f6d7177305ebff350a58ce5f8de1669e",
                "sha256:500d4957e52ddc3351cabf489e79c91c17f6e0899158447047588650b5e69183",
                "sha256:535f6fc4d397c1563d08b88e485c3496cf5784e927af890fb3c3aac7f933ec66",
                "sha256:62fe6c95e3ec8a7fad637b7f3d372c15ec1caa01ab47926cfdf7a75b40e0eac1",
                "sha256:6dd73240d2af64df90aa7c4e7481e23825ea70af4b4922f8ede5b9e35f78a3b1",
                "sha256:717ba8fe3ae9cc0006d7c451f0bb265ee07739daf76355d06366154ee68d221e",
                "sha256:79855e1c5b8da654cf486b830bd42c06e8780cea587384cf6545b7d9ac013a0b",
                "sha256:7c1699dfe0cf8ff607dbdcc1e9b9af1755371f92a68f706051cc8c37d447c905",
                "sha256:88e5fcfb52ee7b911e8bb6d6aa2fd21fbecc674eadd44118a9cc3863f938e735",
                "sha256:8defac2f2ccd6805ebf65f5eeb132adcf2ab57aa11fdf4c0dd5169a004710e7d",
                "sha256:98c7086708b163d425c67c7a91bad6e466bb99d797aa64f965e9d25c12111a5e",
                "sha256:9add70b36c5666a2ed02b43b335fe19002ee5235efd4b8a89bfcf9005bebac0d",
                "sha256:9bf40443012702a1d2070043cb6291650a0841ece432556f784f004937f0f32c",
                "sha256:ade5e387d2ad0d7ebf59146cc00c8044acbd863725f887353a10df825fc8ae21",
                "sha256:b00c1de48212e4cc9603895652c5c410df699856a2853135b3967591e4beebc2",
                "sha256:b1282f8c00509d99fef04d8ba936b156d419be841854fe901d8ae224c59f0be5",
                "sha256:b2051432115498d3562c084a49bba65d97cf251f5a331c64a12ee7e04dacc51b",
                "sha256:ba59edeaa2fc6114428f1637ffff42da1e311e29382d81b339c1817d37ec93c6",
                "sha256:c8716a48d94b06bb3b2524c2b77e055fb313aeb4ea620c8dd03a105574ba704f",
                "sha256:cd5df75523866410809ca100dc9681e301e3c27567cf498077e8551b6d20e42f",
                "sha256:e249096428b3ae81b08327a63a485ad0878de3fb939049038579ac0ef61e17e7"
            ],
            "version": "==1.1.1"
        },
        "numpy": {
            "hashes": [
                "sha256:0778076e764e146d3078b17c24c4d89e0ecd4ac5401beff8e1c87879043a0633",
                "sha256:141c7102f20abe6cf0d54c4ced8d565b86df4d3077ba2343b61a6db996cefec7",
                "sha256:14270a1ee8917d11e7753fb54fc7ffd1934f4d529235beec0b275e2ccf00333b",
                "sha256:27e11c7a8ec9d5838bc59f809bfa86efc8a4fd02e58960fa9c49d998e14332d5",
                "sha256:2a04dda79606f3d2f760384c38ccd3d5b9bb79d4c8126b67aff5eb09a253763e",
                "sha256:3c26010c1b51e1224a3ca6b8df807de6e95128b0908c7e34f190e7775455b0ca",
                "sha256:52c40f1a4262c896420c6ea1c6fda62cf67070e3947e3307f5562bd783a90336",
                "sha256:6e4f8d9e8aa79321657079b9ac03f3cf3fd067bf31c1cca4f56d49543f4356a5",
                "sha256:7242be12a58fec245ee9734e625964b97cf7e3f2f7d016603f9e56660ce479c7",
                "sha256:7dc253b542bfd4b4eb88d9dbae4ca079e7bf2e2afd819ee18891a43db66c60c7",
                "sha256:94f5bd885f67bbb25c82d80184abbf7ce4f6c3c3a41fbaa4182f034bba803e69",
                "sha256:a89e188daa119ffa0d03ce5123dee3f8ffd5115c896c2a9d4f0dbb3d8b95bfa3",
                "sha256:ad3399da9b0ca36e2f24de72f67ab2854a62e623274607e37e0ce5f5d5fa9166",
                "sha256:b0348be89275fd1d4c44ffa39530c41a21062f52299b1e3ee7d1c61f060044b8",
                "sha256:b5554368e4ede1856121b0dfa35ce71768102e4aa55e526cb8de7f374ff78722",
                "sha256:cbddc56b2502d3f87fda4f98d948eb5b11f36ff3902e17cb6cc44727f2200525",
                "sha256:d79f18f41751725c56eceab2a886f021d70fd70a6188fd386e29a045945ffc10",
                "sha256:dc2ca26a19ab32dc475dbad9dfe723d3a64c835f4c23f625c2b6566ca32b9f29",
                "sha256:dd9bcd4f294eb0633bb33d1a74febdd2b9018b8b8ed325f861fffcd2c7660bb8",
                "sha256:e8baab1bc7c9152715844f1faca6744f2416929de10d7639ed49555a85549f52",
                "sha256:ec31fe12668af687b99acf1567399632a7c47b0e17cfb9ae47c098644ef36797",
                "sha256:f12b4f7e2d8f9da3141564e6737d79016fe5336cc92de6814eba579744f65b0a",
                "sha256:f58ac38d5ca045a377b3b377c84df8175ab992c970a53332fa8ac2373df44ff7"
            ],
            "version": "==1.16.4"
        },
        "pandas": {
            "hashes": [
                "sha256:071e42b89b57baa17031af8c6b6bbd2e9a5c68c595bc6bf9adabd7a9ed125d3b",
                "sha256:17450e25ae69e2e6b303817bdf26b2cd57f69595d8550a77c308be0cd0fd58fa",
                "sha256:17916d818592c9ec891cbef2e90f98cc85e0f1e89ed0924c9b5220dc3209c846",
                "sha256:2538f099ab0e9f9c9d09bbcd94b47fd889bad06dc7ae96b1ed583f1dc1a7a822",
                "sha256:366f30710172cb45a6b4f43b66c220653b1ea50303fbbd94e50571637ffb9167",
                "sha256:42e5ad741a0d09232efbc7fc648226ed93306551772fc8aecc6dce9f0e676794",
                "sha256:4e718e7f395ba5bfe8b6f6aaf2ff1c65a09bb77a36af6394621434e7cc813204",
                "sha256:4f919f409c433577a501e023943e582c57355d50a724c589e78bc1d551a535a2",
                "sha256:4fe0d7e6438212e839fc5010c78b822664f1a824c0d263fd858f44131d9166e2",
                "sha256:5149a6db3e74f23dc3f5a216c2c9ae2e12920aa2d4a5b77e44e5b804a5f93248",
                "sha256:627594338d6dd995cfc0bacd8e654cd9e1252d2a7c959449228df6740d737eb8",
                "sha256:83c702615052f2a0a7fb1dd289726e29ec87a27272d775cb77affe749cca28f8",
                "sha256:8c872f7fdf3018b7891e1e3e86c55b190e6c5cee70cab771e8f246c855001296",
                "sha256:90f116086063934afd51e61a802a943826d2aac572b2f7d55caaac51c13db5b5",
                "sha256:a3352bacac12e1fc646213b998bce586f965c9d431773d9e91db27c7c48a1f7d",
                "sha256:bcdd06007cca02d51350f96debe51331dec429ac8f93930a43eb8fb5639e3eb5",
                "sha256:c1bd07ebc15285535f61ddd8c0c75d0d6293e80e1ee6d9a8d73f3f36954342d0",
                "sha256:c9a4b7c55115eb278c19aa14b34fcf5920c8fe7797a09b7b053ddd6195ea89b3",
                "sha256:cc8fc0c7a8d5951dc738f1c1447f71c43734244453616f32b8aa0ef6013a5dfb",
                "sha256:d7b460bc316064540ce0c41c1438c416a40746fd8a4fb2999668bf18f3c4acf1"
            ],
            "index": "pypi",
            "version": "==0.24.2"
        },
        "pastedeploy": {
            "hashes": [
                "sha256:d423fb9d51fdcf853aa4ff43ac7ec469b643ea19590f67488122d6d0d772350a",
                "sha256:fe53697ec2754703096b75d0ba29112b0590b4ce46726fe4f9408fd006e4eefc"
            ],
            "version": "==2.0.1"
        },
        "plaster": {
            "hashes": [
                "sha256:215c921a438b5349931fd7df9a5a11a3572947f20f4bc6dd622ac08f1c3ba249",
                "sha256:8351c7c7efdf33084c1de88dd0f422cbe7342534537b553c49b857b12d98c8c3"
            ],
            "version": "==1.0"
        },
        "plaster-pastedeploy": {
            "hashes": [
                "sha256:391d93a4e1ff81fc3bae27508ebb765b61f1724ae6169f83577f06b6357be7fd",
                "sha256:7c8aa37c917b615c70bf942b24dc1e0455c49f62f1a2214b1a0dd98871644bbb"
            ],
            "version": "==0.7"
        },
        "pymysql": {
            "hashes": [
                "sha256:3943fbbbc1e902f41daf7f9165519f140c4451c179380677e6a848587042561a",
                "sha256:d8c059dcd81dedb85a9f034d5e22dcb4442c0b201908bede99e306d65ea7c8e7"
            ],
            "index": "pypi",
            "version": "==0.9.3"
        },
        "pyramid": {
            "hashes": [
                "sha256:51bf64647345237c00d2fe558935e0e4938c156e29f17e203457fd8e1d757dc7",
                "sha256:d80ccb8cfa550139b50801591d4ca8a5575334adb493c402fce2312f55d07d66"
            ],
            "index": "pypi",
            "version": "==1.10.4"
        },
        "python-dateutil": {
            "hashes": [
                "sha256:7e6584c74aeed623791615e26efd690f29817a27c73085b78e4bad02493df2fb",
                "sha256:c89805f6f4d64db21ed966fda138f8a5ed7a4fdbc1a8ee329ce1b74e3c74da9e"
            ],
            "version": "==2.8.0"
        },
        "python-editor": {
            "hashes": [
                "sha256:1bf6e860a8ad52a14c3ee1252d5dc25b2030618ed80c022598f00176adc8367d",
                "sha256:51fda6bcc5ddbbb7063b2af7509e43bd84bfc32a4ff71349ec7847713882327b",
                "sha256:5f98b069316ea1c2ed3f67e7f5df6c0d8f10b689964a4a811ff64f0106819ec8"
            ],
            "version": "==1.0.4"
        },
        "pytz": {
            "hashes": [
                "sha256:303879e36b721603cc54604edcac9d20401bdbe31e1e4fdee5b9f98d5d31dfda",
                "sha256:d747dd3d23d77ef44c6a3526e274af6efeb0a6f1afd5a69ba4d5be4098c8e141"
            ],
            "version": "==2019.1"
        },
        "simplejson": {
            "hashes": [
                "sha256:067a7177ddfa32e1483ba5169ebea1bc2ea27f224853211ca669325648ca5642",
                "sha256:2fc546e6af49fb45b93bbe878dea4c48edc34083729c0abd09981fe55bdf7f91",
                "sha256:354fa32b02885e6dae925f1b5bbf842c333c1e11ea5453ddd67309dc31fdb40a",
                "sha256:37e685986cf6f8144607f90340cff72d36acf654f3653a6c47b84c5c38d00df7",
                "sha256:3af610ee72efbe644e19d5eaad575c73fb83026192114e5f6719f4901097fce2",
                "sha256:3b919fc9cf508f13b929a9b274c40786036b31ad28657819b3b9ba44ba651f50",
                "sha256:3dd289368bbd064974d9a5961101f080e939cbe051e6689a193c99fb6e9ac89b",
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}

Issue Analytics

State:
Created 4 years ago
Comments:8 (2 by maintainers)

Top GitHub Comments

1reaction

frostmingcommented, Jul 3, 2019

@birnbera For your first question, no, there is no such way to sync Pipfile.lock with an existing venv. However, there is a workaround to achieve such a thing:

In the virtualenv, pip freeze > requirements.txt
pipenv install will read the dependencies in requirements.txt to create a Pipenv env, together with Pipfile pairs.

For the second question, you can add the following section to your Pipfile to allow prerelease versions to be installed:

[pipenv]
allow_prereleases = true

0reactions

birnberacommented, Jul 3, 2019

@frostming Your workaround suggestion seems to be the best option in this case.

Unfortunately, due to the behavior of PyCharm, when I tried to initialize a new interpreter with my Pipfile and it deleted my existing virtualenv and started to reinstall everything from Pipfile.lock. When reinstalling pandas I got an error related to some kind of LooseVersion class being unable to parse a (probably) malformed version specifier in one of its dependencies. I remember seeing this error before, but I can’t remember what I did about it…

In any case, your pip freeze suggestion seems to answer my initial question, so I will close this issue. Thanks!

Edit: In case anyone sees this and runs into the LooseVersion issue for pandas see this: https://github.com/jupyter-widgets/ipyleaflet/issues/300#issuecomment-496143615

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