`tox` warning when running default configuration

Hello,

I am testing this as a potential way to structure a project I’m working on. First of all - awesome job.

I’ve set up my repository and made a few changes to the environment files and so on and I tested to see that tox works with some dummy test file and dummy test function before adding my code to the repository. When I run the command tox, the test passes but I get the following warning:

The way I understand this is that the extras field under [testenv] basically means that tox executes pip install[testing] since extras is bound to testing and there is an entry in the setup.cfg to install the dependencies. Hence, I don’t understand exactly what tox complains about? Should I go and explicitly add deps to [testenv] ?

Many thanks for great work, it’s a massive help!

Relevant testenv config.

[testenv]
description = invoke pytest to run automated tests
isolated_build = True
setenv =
    TOXINIDIR = {toxinidir}
passenv =
    HOME
extras =
    testing
commands =
    pytest {posargs}

Relevant part of setup.cfg

[options.extras_require]
# Add here additional requirements for extra features, to install with:
# `pip install sgd-utils[PDF]` like:
# PDF = ReportLab; RXP

# Add here test requirements (semicolon/line-separated)
testing =
    setuptools
    pytest>=6.2.3, <7.0.0
    pytest-cov

Please provide any additional information below. I created my environment using the command:

conda env create -f environment.yml

where the environment file is

name: my_package_name
channels:
  - defaults
  - conda-forge
  - pytorch
  # - fastai
dependencies:
  - python>=3.8, <3.9
  - pip
  # BASICS
  # VISUALIZATION
  - matplotlib
  - seaborn
  # OTHER TOOLS
  - pip:
     - -e .  # install git checkout of sgd-utils in editable mode
     # add here only pip-packages that are not available in conda/conda-forge!
     # or use if your preferred way of installing packages is pip in a conda env :)

and then updating with

conda env update -f dev_environment.yml

where the dev_environment.yml file is

name: my_package_name
channels:
  - defaults
  - conda-forge
  - pytorch
dependencies:
  - pip:
    #   - jupyterlab
    - pytest>=6.2.3, <7.0.0
    - pytest-cov
    - tox
    - pre_commit
    - nbdime
    #- nbstripout
    - sphinx
    - recommonmark
    - flake8>=3.9.1, <4.0.0

Versions and main components

• PyScaffold Version: 4.0.1
• dsproject extension: 0.6.1
• Python Version: 3.8.8
• Operating system: Windows 10 (but working in WSL 1)
• How did you install PyScaffold: pip

[alexcoca]

@FlorianWilhelm, I have followed your advice and put the development dependencies under -dependencies rather than -pip. tox now runs warning free 👍! Thank you so much for your help and sorry for the delay.

Your work is very valuable for machine learning research.

[FlorianWilhelm]

Hi @alexcoca, any news on this issue? Have you had time to test it out again?