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hibernate with jbang fails with class loader issue

See original GitHub issue

Describe the bug use this code:

//usr/bin/env jbang "$0" "$@" ; exit $?
//DEPS io.quarkus:quarkus-picocli:1.8.0.CR1
//DEPS io.quarkus:quarkus-hibernate-orm-panache:1.8.0.CR1
//DEPS io.quarkus:quarkus-jdbc-postgresql:1.8.0.CR1
//JAVA_OPTIONS -Djava.util.logging.manager=org.jboss.logmanager.LogManager
//Q:CONFIG quarkus.banner.enabled=false
//Q:CONFIG quarkus.log.level=WARN
//Q:CONFIG quarkus.datasource.db-kind = postgresql
//Q:CONFIG quarkus.datasource.username = sarah
//Q:CONFIG quarkus.datasource.password = connor
//Q:CONFIG quarkus.datasource.jdbc.url = jdbc:tc:postgresql:9.6.8:///databasename
//Q:CONFIG quarkus.hibernate-orm.database.generation = drop-and-create

import io.quarkus.hibernate.orm.panache.PanacheEntity;
import picocli.CommandLine;

import javax.enterprise.context.Dependent;
import javax.inject.Inject;
import javax.persistence.Entity;

import io.quarkus.runtime.annotations.QuarkusMain;
import io.quarkus.runtime.QuarkusApplication;

import java.time.LocalDate;
import java.util.List;

@QuarkusMain
@CommandLine.Command 
public class quarkusclidb implements Runnable, QuarkusApplication {

    @CommandLine.Option(names = {"-n", "--name"}, description = "Who will we greet?", defaultValue = "World")
    String name;

    @Inject
    CommandLine.IFactory factory; 

    private final GreetingService greetingService;

    public quarkusclidb(GreetingService greetingService) {
        this.greetingService = greetingService;
    }

    @Override
    public void run() {
        greetingService.sayHello(name);
    }

    @Override
    public int run(String... args) throws Exception {
        return new CommandLine(this, factory).execute(args);
    }

    public static void main(String... args) {
        io.quarkus.runtime.Quarkus.run(quarkusclidb.class, args);
    }

    @Entity
    static public class Person extends PanacheEntity {
        public String name;
        public LocalDate birth;
        public String status;

        public static Person findByName(String name){
            return find("name", name).firstResult();
        }

        public static List<Person> findAlive(){
            return list("status", "alive");
        }

        public static void deleteStefs(){
            delete("name", "Stef");
        }
    }
}

@Dependent
class GreetingService {
    void sayHello(String name) {
        System.out.println("Hello " + name + "!");
    }
}

build/run it with: jbang quarkusclidb.java

and you get:

[jbang] Post build with io.quarkus.launcher.JBangIntegration
Sep 05, 2020 12:42:05 AM org.jboss.threads.Version <clinit>
INFO: JBoss Threads version 3.1.1.Final
Sep 05, 2020 12:42:05 AM io.quarkus.agroal.deployment.AgroalProcessor build
WARN: The Agroal dependency is present but no JDBC datasources have been defined.
dev.jbang.ExitException: Issue running postBuild()
	at dev.jbang.IntegrationManager.runIntegration(IntegrationManager.java:116)
	at dev.jbang.cli.Run.build(Run.java:217)
	at dev.jbang.cli.Run.doCall(Run.java:97)
	at dev.jbang.cli.BaseCommand.call(BaseCommand.java:59)
	at dev.jbang.cli.BaseCommand.call(BaseCommand.java:13)
	at picocli.CommandLine.executeUserObject(CommandLine.java:1933)
	at picocli.CommandLine.access$1100(CommandLine.java:145)
	at picocli.CommandLine$RunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2332)
	at picocli.CommandLine$RunLast.handle(CommandLine.java:2326)
	at picocli.CommandLine$RunLast.handle(CommandLine.java:2291)
	at picocli.CommandLine$AbstractParseResultHandler.execute(CommandLine.java:2159)
	at picocli.CommandLine.execute(CommandLine.java:2058)
	at dev.jbang.Main.main(Main.java:14)
Caused by: java.lang.reflect.InvocationTargetException
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:566)
	at dev.jbang.IntegrationManager.runIntegration(IntegrationManager.java:89)
	... 12 more
Caused by: java.lang.RuntimeException: java.lang.reflect.InvocationTargetException
	at io.quarkus.launcher.JBangIntegration.postBuild(JBangIntegration.java:85)
	... 17 more
Caused by: java.lang.reflect.InvocationTargetException
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:566)
	at io.quarkus.launcher.JBangIntegration.postBuild(JBangIntegration.java:77)
	... 17 more
Caused by: java.lang.RuntimeException: java.lang.RuntimeException: java.lang.RuntimeException: io.quarkus.builder.BuildException: Build failure: Build failed due to errors
	[error]: Build step io.quarkus.hibernate.orm.deployment.HibernateOrmProcessor#parsePersistenceXmlDescriptors threw an exception: java.lang.NoClassDefFoundError: org/xml/sax/SAXException
	at io.quarkus.hibernate.orm.deployment.HibernateOrmProcessor.parsePersistenceXmlDescriptors(HibernateOrmProcessor.java:225)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:566)
	at io.quarkus.deployment.ExtensionLoader$2.execute(ExtensionLoader.java:936)
	at io.quarkus.builder.BuildContext.run(BuildContext.java:277)
	at org.jboss.threads.ContextClassLoaderSavingRunnable.run(ContextClassLoaderSavingRunnable.java:35)
	at org.jboss.threads.EnhancedQueueExecutor.safeRun(EnhancedQueueExecutor.java:2046)
	at org.jboss.threads.EnhancedQueueExecutor$ThreadBody.doRunTask(EnhancedQueueExecutor.java:1578)
	at org.jboss.threads.EnhancedQueueExecutor$ThreadBody.run(EnhancedQueueExecutor.java:1452)
	at java.base/java.lang.Thread.run(Thread.java:834)
	at org.jboss.threads.JBossThread.run(JBossThread.java:479)
Caused by: java.lang.ClassNotFoundException: org.xml.sax.SAXException
	at io.quarkus.launcher.RuntimeLaunchClassLoader.findClass(RuntimeLaunchClassLoader.java:25)
	at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:589)
	at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522)
	at io.quarkus.bootstrap.classloading.QuarkusClassLoader.loadClass(QuarkusClassLoader.java:406)
	at io.quarkus.bootstrap.classloading.QuarkusClassLoader.loadClass(QuarkusClassLoader.java:363)
	... 13 more

	at io.quarkus.bootstrap.JBangBuilderImpl.postBuild(JBangBuilderImpl.java:81)
	... 22 more
Caused by: java.lang.RuntimeException: java.lang.RuntimeException: io.quarkus.builder.BuildException: Build failure: Build failed due to errors
	[error]: Build step io.quarkus.hibernate.orm.deployment.HibernateOrmProcessor#parsePersistenceXmlDescriptors threw an exception: java.lang.NoClassDefFoundError: org/xml/sax/SAXException
	at io.quarkus.hibernate.orm.deployment.HibernateOrmProcessor.parsePersistenceXmlDescriptors(HibernateOrmProcessor.java:225)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:566)
	at io.quarkus.deployment.ExtensionLoader$2.execute(ExtensionLoader.java:936)
	at io.quarkus.builder.BuildContext.run(BuildContext.java:277)
	at org.jboss.threads.ContextClassLoaderSavingRunnable.run(ContextClassLoaderSavingRunnable.java:35)
	at org.jboss.threads.EnhancedQueueExecutor.safeRun(EnhancedQueueExecutor.java:2046)
	at org.jboss.threads.EnhancedQueueExecutor$ThreadBody.doRunTask(EnhancedQueueExecutor.java:1578)
	at org.jboss.threads.EnhancedQueueExecutor$ThreadBody.run(EnhancedQueueExecutor.java:1452)
	at java.base/java.lang.Thread.run(Thread.java:834)
	at org.jboss.threads.JBossThread.run(JBossThread.java:479)
Caused by: java.lang.ClassNotFoundException: org.xml.sax.SAXException
	at io.quarkus.launcher.RuntimeLaunchClassLoader.findClass(RuntimeLaunchClassLoader.java:25)
	at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:589)
	at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522)
	at io.quarkus.bootstrap.classloading.QuarkusClassLoader.loadClass(QuarkusClassLoader.java:406)
	at io.quarkus.bootstrap.classloading.QuarkusClassLoader.loadClass(QuarkusClassLoader.java:363)
	... 13 more

	at io.quarkus.bootstrap.app.CuratedApplication.runInCl(CuratedApplication.java:132)
	at io.quarkus.bootstrap.app.CuratedApplication.runInAugmentClassLoader(CuratedApplication.java:82)
	at io.quarkus.bootstrap.JBangBuilderImpl.postBuild(JBangBuilderImpl.java:78)
	... 22 more
Caused by: java.lang.RuntimeException: io.quarkus.builder.BuildException: Build failure: Build failed due to errors
	[error]: Build step io.quarkus.hibernate.orm.deployment.HibernateOrmProcessor#parsePersistenceXmlDescriptors threw an exception: java.lang.NoClassDefFoundError: org/xml/sax/SAXException
	at io.quarkus.hibernate.orm.deployment.HibernateOrmProcessor.parsePersistenceXmlDescriptors(HibernateOrmProcessor.java:225)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:566)
	at io.quarkus.deployment.ExtensionLoader$2.execute(ExtensionLoader.java:936)
	at io.quarkus.builder.BuildContext.run(BuildContext.java:277)
	at org.jboss.threads.ContextClassLoaderSavingRunnable.run(ContextClassLoaderSavingRunnable.java:35)
	at org.jboss.threads.EnhancedQueueExecutor.safeRun(EnhancedQueueExecutor.java:2046)
	at org.jboss.threads.EnhancedQueueExecutor$ThreadBody.doRunTask(EnhancedQueueExecutor.java:1578)
	at org.jboss.threads.EnhancedQueueExecutor$ThreadBody.run(EnhancedQueueExecutor.java:1452)
	at java.base/java.lang.Thread.run(Thread.java:834)
	at org.jboss.threads.JBossThread.run(JBossThread.java:479)
Caused by: java.lang.ClassNotFoundException: org.xml.sax.SAXException
	at io.quarkus.launcher.RuntimeLaunchClassLoader.findClass(RuntimeLaunchClassLoader.java:25)
	at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:589)
	at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522)
	at io.quarkus.bootstrap.classloading.QuarkusClassLoader.loadClass(QuarkusClassLoader.java:406)
	at io.quarkus.bootstrap.classloading.QuarkusClassLoader.loadClass(QuarkusClassLoader.java:363)
	... 13 more

	at io.quarkus.deployment.jbang.JBangAugmentorImpl.accept(JBangAugmentorImpl.java:119)
	at io.quarkus.deployment.jbang.JBangAugmentorImpl.accept(JBangAugmentorImpl.java:36)
	at io.quarkus.bootstrap.app.CuratedApplication.runInCl(CuratedApplication.java:129)
	... 24 more
Caused by: io.quarkus.builder.BuildException: Build failure: Build failed due to errors
	[error]: Build step io.quarkus.hibernate.orm.deployment.HibernateOrmProcessor#parsePersistenceXmlDescriptors threw an exception: java.lang.NoClassDefFoundError: org/xml/sax/SAXException
	at io.quarkus.hibernate.orm.deployment.HibernateOrmProcessor.parsePersistenceXmlDescriptors(HibernateOrmProcessor.java:225)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:566)
	at io.quarkus.deployment.ExtensionLoader$2.execute(ExtensionLoader.java:936)
	at io.quarkus.builder.BuildContext.run(BuildContext.java:277)
	at org.jboss.threads.ContextClassLoaderSavingRunnable.run(ContextClassLoaderSavingRunnable.java:35)
	at org.jboss.threads.EnhancedQueueExecutor.safeRun(EnhancedQueueExecutor.java:2046)
	at org.jboss.threads.EnhancedQueueExecutor$ThreadBody.doRunTask(EnhancedQueueExecutor.java:1578)
	at org.jboss.threads.EnhancedQueueExecutor$ThreadBody.run(EnhancedQueueExecutor.java:1452)
	at java.base/java.lang.Thread.run(Thread.java:834)
	at org.jboss.threads.JBossThread.run(JBossThread.java:479)
Caused by: java.lang.ClassNotFoundException: org.xml.sax.SAXException
	at io.quarkus.launcher.RuntimeLaunchClassLoader.findClass(RuntimeLaunchClassLoader.java:25)
	at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:589)
	at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522)
	at io.quarkus.bootstrap.classloading.QuarkusClassLoader.loadClass(QuarkusClassLoader.java:406)
	at io.quarkus.bootstrap.classloading.QuarkusClassLoader.loadClass(QuarkusClassLoader.java:363)
	... 13 more

	at io.quarkus.builder.Execution.run(Execution.java:116)
	at io.quarkus.builder.BuildExecutionBuilder.execute(BuildExecutionBuilder.java:79)
	at io.quarkus.deployment.QuarkusAugmentor.run(QuarkusAugmentor.java:149)
	at io.quarkus.deployment.jbang.JBangAugmentorImpl.accept(JBangAugmentorImpl.java:97)
	... 26 more
Caused by: java.lang.NoClassDefFoundError: org/xml/sax/SAXException
	at io.quarkus.hibernate.orm.deployment.HibernateOrmProcessor.parsePersistenceXmlDescriptors(HibernateOrmProcessor.java:225)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:566)
	at io.quarkus.deployment.ExtensionLoader$2.execute(ExtensionLoader.java:936)
	at io.quarkus.builder.BuildContext.run(BuildContext.java:277)
	at org.jboss.threads.ContextClassLoaderSavingRunnable.run(ContextClassLoaderSavingRunnable.java:35)
	at org.jboss.threads.EnhancedQueueExecutor.safeRun(EnhancedQueueExecutor.java:2046)
	at org.jboss.threads.EnhancedQueueExecutor$ThreadBody.doRunTask(EnhancedQueueExecutor.java:1578)
	at org.jboss.threads.EnhancedQueueExecutor$ThreadBody.run(EnhancedQueueExecutor.java:1452)
	at java.base/java.lang.Thread.run(Thread.java:834)
	at org.jboss.threads.JBossThread.run(JBossThread.java:479)
Caused by: java.lang.ClassNotFoundException: org.xml.sax.SAXException
	at io.quarkus.launcher.RuntimeLaunchClassLoader.findClass(RuntimeLaunchClassLoader.java:25)
	at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:589)
	at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522)
	at io.quarkus.bootstrap.classloading.QuarkusClassLoader.loadClass(QuarkusClassLoader.java:406)
	at io.quarkus.bootstrap.classloading.QuarkusClassLoader.loadClass(QuarkusClassLoader.java:363)
	... 13 more

Probably similar issue as in #11542 where we found places TCCL was not put as a fallback for class.forname.

Issue Analytics

State:
Created 3 years ago
Comments:14 (13 by maintainers)

Top GitHub Comments

1reaction

Sannecommented, Sep 7, 2020

hum, sorry yes it seemed to work but I forgot to use --verbose. It actually still fails.

0reactions

maxandersencommented, Sep 8, 2020

with #11957 this updated (as the original had bugs/was incomplete) works:

//usr/bin/env jbang "$0" "$@" ; exit $?
/**
 * Run this with `jbang -Dquarkus.container-image.build=true build quarkus.java`
 * and it builds a docker image.
 */
//DEPS io.quarkus:quarkus-picocli:${q.v:1.8.0.CR1}
//DEPS io.quarkus:quarkus-hibernate-orm-panache:${q.v:1.8.0.CR1}
//DEPS io.quarkus:quarkus-jdbc-postgresql:${q.v:1.8.0.CR1}
//DEPS org.testcontainers:postgresql:1.14.3
//DEPS org.postgresql:postgresql:42.1.4
//JAVA_OPTIONS -Djava.util.logging.manager=org.jboss.logmanager.LogManager
//Q:CONFIG quarkus.banner.enabled=false
//Q:CONFIG quarkus.log.level=WARN
//Q:CONFIG quarkus.datasource.db-kind=postgresql
//Q:CONFIG quarkus.datasource.username=sarah
//Q:CONFIG quarkus.datasource.password=connor
//Q:CONFIG quarkus.datasource.jdbc.url=jdbc:postgresql:databasename
//Q:CONFIG quarkus.hibernate-orm.database.generation=drop-and-create

import com.github.dockerjava.api.command.CreateContainerCmd;
import com.github.dockerjava.api.exception.NotFoundException;
import com.github.dockerjava.api.model.ExposedPort;
import com.github.dockerjava.api.model.PortBinding;
import com.github.dockerjava.api.model.Ports;
import io.quarkus.hibernate.orm.panache.PanacheEntity;
import org.testcontainers.containers.PostgreSQLContainer;
import picocli.CommandLine;

import javax.enterprise.context.ApplicationScoped;
import javax.enterprise.context.Dependent;
import javax.enterprise.context.control.ActivateRequestContext;
import javax.inject.Inject;
import javax.persistence.Entity;
import javax.transaction.Transactional;

import io.quarkus.runtime.annotations.QuarkusMain;
import io.quarkus.runtime.QuarkusApplication;

import java.time.LocalDate;
import java.time.Month;
import java.util.List;
import java.util.Optional;
import java.util.function.Consumer;

@QuarkusMain
@CommandLine.Command 
public class quarkusclidb implements Runnable, QuarkusApplication {

    @CommandLine.Option(names = {"-n", "--name"}, description = "Who will we greet?", defaultValue = "World")
    String name;

    @Inject
    CommandLine.IFactory factory; 

    private final GreetingService greetingService;

    public quarkusclidb(GreetingService greetingService) {
        this.greetingService = greetingService;
    }

    @Override
    @ActivateRequestContext
    @Transactional
    public void run() {
       greetingService.sayHello(name);
    }

    @Override
    public int run(String... args) throws Exception {
        return new CommandLine(this, factory).execute(args);
    }

    public static void main(String... args) {
        int hostPort = 5432;
        int containerExposedPort = 5432;

        Consumer<CreateContainerCmd> cmd = e -> e.withPortBindings(new PortBinding((Ports.Binding.bindPort(hostPort)),new ExposedPort(containerExposedPort)));

        var dbcontainer = new PostgreSQLContainer("postgres:11.1").withDatabaseName("databasename")
        .withUsername("sarah").withPassword("connor").withCreateContainerCmdModifier(cmd);

        dbcontainer.start();
        io.quarkus.runtime.Quarkus.run(quarkusclidb.class, args);
    }

    @Entity
    static public class Person extends PanacheEntity {
        public String name;
        public LocalDate birth;
        public String status;

        public static Person findByName(String name){
            return find("name", name).firstResult();
        }

        public static List<Person> findAlive(){
            return list("status", "alive");
        }

        public static void deleteStefs(){
            delete("name", "Stef");
        }
    }

    @Dependent
    static public class GreetingService {
        void sayHello(String name) {

            // creating a person
            Person person = new Person();
            person.name = "Stef";
            person.birth = LocalDate.of(1910, Month.FEBRUARY, 1);
            person.status = "alive";

            // persist it
            person.persist();

            List<Person> allPersons = Person.listAll();

            allPersons.forEach(System.out::println);

            long countAll = Person.count();

            System.out.println("Person count:" + countAll);

        }
    }
}

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