Freesurfer=7.1.1-min

Hey folks,

I am interested in making a Freesurfer7-mini container.

Followed the instructions on the examples page on the website, but get the following error: [NEURODOCKER 2022-07-14 09:27:53,178 WARNING]: A newer version (0.8.0) of ReproNim/neurodocker is available. You are using 0.7.0 [NEURODOCKER 2022-07-14 09:27:53,184 ERROR]: Failed to instantiate <class 'neurodocker.interfaces.interfaces.FreeSurfer'>: URL not found for version '7.1.1-min'. Valid versions are 6.0.1, 6.0.0, 6.0.0-min

Tried to then go back and get a more recent Neurodocker, hoping that would have the Freesurfer=7.1.1 but stumbled again. docker run --rm repronim/neurodocker:0.8.0 --help Unable to find image 'repronim/neurodocker:0.8.0' locally docker: Error response from daemon: manifest for repronim/neurodocker:0.8.0 not found: manifest unknown: manifest unknown. See 'docker run --help'.

Bit of a rookie, so grateful for any help.

Kindest regards, Conor

[ConorOW]

Thanks so much @pwighton, I got it to run using your suggestion. I would then get an error at the build stage.

So this wouldn’t work: docker build --tag freesurfer:7.1.1-min --file freesurfer7-min.Dockerfile .

but this would: docker build --file freesurfer7-min.Dockerfile .

So I took the second approach, and then named/tagged the image: docker image tag <image id> freesurfer7-min

Thank you again for your wonderful help.

Cheers, Conor

[ConorOW]

Thanks so much Paul, works perfectly. Appreciate the support.

Cheers, Conor