Cannot import with latest pymc3 & theano
See original GitHub issueDescribe the bug
import starry
throws a Theano error
To Reproduce
import starry
---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
<ipython-input-1-53b69aeac1cd> in <module>
1 import matplotlib.pyplot as plt
2 import numpy as np
----> 3 import starry
4
5 np.random.seed(12)
~/opt/anaconda3/lib/python3.8/site-packages/starry/__init__.py in <module>
17 # Import the main interface
18 from ._config import config
---> 19 from . import kepler, linalg, maps
20 from .maps import Map
21 from .kepler import Primary, Secondary, System
~/opt/anaconda3/lib/python3.8/site-packages/starry/kepler.py in <module>
2 from . import config
3 from ._constants import *
----> 4 from .maps import MapBase, RVBase, ReflectedBase
5 from ._core import OpsSystem, math, linalg
6 import numpy as np
~/opt/anaconda3/lib/python3.8/site-packages/starry/maps.py in <module>
2 from . import config
3 from ._constants import *
----> 4 from ._core import OpsYlm, OpsLD, OpsReflected, OpsRV, linalg, math
5 from ._indices import integers, get_ylm_inds, get_ul_inds, get_ylmw_inds
6 from ._plotting import (
~/opt/anaconda3/lib/python3.8/site-packages/starry/_core/__init__.py in <module>
1 # -*- coding: utf-8 -*-
----> 2 from . import core, ops, utils
3
4 from .core import *
5 from .math import math, linalg
~/opt/anaconda3/lib/python3.8/site-packages/starry/_core/core.py in <module>
31 # starry requires exoplanet >= v0.2.0
32 from packaging import version
---> 33 import exoplanet
34
35 if version.parse(exoplanet.__version__) < version.parse("0.2.0"):
~/opt/anaconda3/lib/python3.8/site-packages/exoplanet/__init__.py in <module>
11 ]
12
---> 13 from . import distributions, interp, orbits
14 from .citations import CITATIONS
15 from .distributions import * # NOQA
~/opt/anaconda3/lib/python3.8/site-packages/exoplanet/distributions/__init__.py in <module>
14 ]
15
---> 16 from . import eccentricity
17 from .base import Angle, Periodic, UnitDisk, UnitUniform, UnitVector
18 from .deprecated import RadiusImpact, get_joint_radius_impact # NOQA
~/opt/anaconda3/lib/python3.8/site-packages/exoplanet/distributions/eccentricity.py in <module>
4
5 import numpy as np
----> 6 import pymc3 as pm
7 import theano.tensor as tt
8
~/opt/anaconda3/lib/python3.8/site-packages/pymc3/__init__.py in <module>
39 __set_compiler_flags()
40
---> 41 from . import gp, ode, sampling
42 from .backends import load_trace, save_trace
43 from .backends.tracetab import *
~/opt/anaconda3/lib/python3.8/site-packages/pymc3/gp/__init__.py in <module>
14
15 from . import cov, mean, util
---> 16 from .gp import TP, Latent, LatentKron, Marginal, MarginalKron, MarginalSparse
~/opt/anaconda3/lib/python3.8/site-packages/pymc3/gp/gp.py in <module>
23 import pymc3 as pm
24
---> 25 from pymc3.distributions import draw_values
26 from pymc3.gp.cov import Constant, Covariance
27 from pymc3.gp.mean import Zero
~/opt/anaconda3/lib/python3.8/site-packages/pymc3/distributions/__init__.py in <module>
13 # limitations under the License.
14
---> 15 from . import shape_utils, timeseries, transforms
16 from .bart import BART
17 from .bound import Bound
~/opt/anaconda3/lib/python3.8/site-packages/pymc3/distributions/timeseries.py in <module>
21 from theano import scan
22
---> 23 from . import distribution, multivariate
24 from .continuous import Flat, Normal, get_tau_sigma
25 from .shape_utils import to_tuple
~/opt/anaconda3/lib/python3.8/site-packages/pymc3/distributions/multivariate.py in <module>
25 from scipy import linalg, stats
26 from theano.gof.op import get_test_value
---> 27 from theano.gof.utils import TestValueError
28 from theano.tensor.nlinalg import det, eigh, matrix_inverse, trace
29 from theano.tensor.slinalg import Cholesky
ImportError: cannot import name 'TestValueError' from 'theano.gof.utils' (/Users/james/opt/anaconda3/lib/python3.8/site-packages/theano/gof/utils.py)
Your setup (please complete the following information):
- Version of starry: 1.0.0 installed via pip.
- Operating system: macOS 11.1
- Python version & installation method (pip, conda, etc.): Python 3.8.5 via anaconda.
exoplanet
also installed via pip and has same error
Issue Analytics
- State:
- Created 3 years ago
- Comments:15 (3 by maintainers)
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This is the same problem: @lgrcia, you must have Theano-pymc installed. Starry is not compatible with (several!) of the most recent versions of PyMC3 or the Theano-pymc project. You’ll need to run
I know this is closed, but after struggling to get pymc3 worining on an imac, I stumbled across the following which worked for me on stackoverflow: https://stackoverflow.com/questions/65543096/i-cannot-import-pymc3
conda remove theano pip uninstall Theano Theano-PyMC PyMC3 pip install PyMC3