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Sample names rearranged

See original GitHub issue

If I give a set of bam files to samplot, the last sample’s name gets assigned to the first figure and all the sample names from then gets reassigned to the next figure. For example:

samplot.py -b sample1_sorted.bam sample2_sorted.bam sample3_sorted.bam sample4_sorted.bam sample5_sorted.bam sample6_sorted.bam sample7_sorted.bam sample8_sorted.bam -o compare_all_adhesion.png -s 110000 -e 130000 -c tig00000012_pilon

In this case (8 samples), the last label, “sample8_sorted.bam” got assigned to the first figure, label - “sample1_sorted.bam” got assigned to the 2nd figure and so on. Is this a known issue or am I making a mistake in specifying an option here?

I have tried this by explicitly specifying labels for figures and same issue arises.

Issue Analytics

  • State:closed
  • Created 4 years ago
  • Comments:9

github_iconTop GitHub Comments

1reaction
jbelyeucommented, Jun 12, 2020

I think I found it! The issue appeared for me in a case where I didn’t specify SV type. It’s fixed in version 1.0.14 (should be available from conda tomorrow)

0reactions
marcjwilliams1commented, Jun 15, 2020

Thanks! Will try it in the next few days.

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