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BUG: Container build started failing since scipy 1.7.2

See original GitHub issue

Describe your issue.

For one of my services running in K8s I have my base image with Debian GNU/Linux 10 (buster) and Python 3.7.5 installed into this image. On top of that, at every push to repo, my CI/CD pipeline builds another image with different Python packages including scipy. Everything had worked fine until I pushed new code today which apparently triggered installing scipy==1.7.2 into my Docker container for the first time. It used to be 1.7.1 before that. The version of scipy used to get updated every time because it had not been put explicitly into requirements.txt before. It had only been installed as a dependency of another Python package.

After seeing my CI/CD pipeline failing I fixed scipy to 1.7.1 in requirements.txt file, which is run by my Dockerfile. And everything started working for me again.

So the problem is kinda fixed for me now, but still the 1.7.2 release page here does not inform of this kind of possible problems after version update. And all this is quite a bit more problematic than I could expect from a minor bug fix release like this one.

Reproducing Code Example

This code broke:

`RUN pip3 install -r requirements.txt`

Error message

Here's my GitLab runner's logs:
 wheels for collected packages: numpy, scipy
  Running setup.py bdist_wheel for numpy: started
  Running setup.py bdist_wheel for numpy: still running...
  Running setup.py bdist_wheel for numpy: still running...
  Running setup.py bdist_wheel for numpy: still running...
  Running setup.py bdist_wheel for numpy: finished with status 'done'
  Stored in directory: /root/.cache/pip/wheels/32/74/29/a670d29ea068e3ff91889eed2a6b590d0b39af39ec77d49607
  Running setup.py bdist_wheel for scipy: started
  Running setup.py bdist_wheel for scipy: still running...
  Running setup.py bdist_wheel for scipy: still running...
  Running setup.py bdist_wheel for scipy: finished with status 'error'
  Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-1s08xzuz/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-mr6ylhmu --python-tag cp37:
  Running from SciPy source directory.
  Cythonizing sources
  Running scipy/linalg/_generate_pyx.py
  Running scipy/stats/_generate_pyx.py
  Running scipy/special/_generate_pyx.py
  Processing scipy/spatial/_voronoi.pyx
  Processing scipy/spatial/ckdtree.pyx
  Processing scipy/spatial/qhull.pyx
  Processing scipy/spatial/_hausdorff.pyx
  Processing scipy/spatial/transform/rotation.pyx
  Processing scipy/linalg/cython_blas.pyx
  Processing scipy/linalg/_decomp_update.pyx.in
  Processing scipy/linalg/_matfuncs_sqrtm_triu.pyx
  Processing scipy/linalg/cython_lapack.pyx
  Processing scipy/linalg/_solve_toeplitz.pyx
  Processing scipy/fftpack/convolve.pyx
  Processing scipy/signal/_sosfilt.pyx
  Processing scipy/signal/_peak_finding_utils.pyx
  Processing scipy/signal/_upfirdn_apply.pyx
  Processing scipy/signal/_max_len_seq_inner.pyx
  Processing scipy/signal/_spectral.pyx
  Processing scipy/cluster/_optimal_leaf_ordering.pyx
  Processing scipy/cluster/_hierarchy.pyx
  Processing scipy/cluster/_vq.pyx
  Processing scipy/optimize/_group_columns.pyx
  Processing scipy/optimize/_bglu_dense.pyx
  Processing scipy/optimize/_trlib/_trlib.pyx
  Processing scipy/optimize/cython_optimize/_zeros.pyx.in
  Processing scipy/optimize/_highs/cython/src/_highs_constants.pyx
  Processing scipy/optimize/_highs/cython/src/_highs_wrapper.pyx
  Processing scipy/optimize/_lsq/givens_elimination.pyx
  Processing scipy/sparse/_csparsetools.pyx.in
  Processing scipy/sparse/csgraph/_matching.pyx
  Processing scipy/sparse/csgraph/_min_spanning_tree.pyx
  Processing scipy/sparse/csgraph/_flow.pyx
  Processing scipy/sparse/csgraph/_shortest_path.pyx
  Processing scipy/sparse/csgraph/_traversal.pyx
  Processing scipy/sparse/csgraph/_reordering.pyx
  Processing scipy/sparse/csgraph/_tools.pyx
  Processing scipy/ndimage/src/_ni_label.pyx
  Processing scipy/ndimage/src/_cytest.pyx
  Processing scipy/stats/_sobol.pyx
  Processing scipy/stats/_stats.pyx
  Processing scipy/stats/_qmc_cy.pyx
  Processing scipy/stats/biasedurn.pyx
  Processing scipy/stats/_boost/src/binom_ufunc.pyx
  Processing scipy/stats/_boost/src/nbinom_ufunc.pyx
  Processing scipy/stats/_boost/src/beta_ufunc.pyx
  Processing scipy/special/_ellip_harm_2.pyx
  Processing scipy/special/_test_round.pyx
  Processing scipy/special/_comb.pyx
  Processing scipy/special/cython_special.pyx
  Processing scipy/special/_ufuncs_cxx.pyx
  Processing scipy/special/_ufuncs.pyx
  Processing scipy/interpolate/interpnd.pyx
  Processing scipy/interpolate/_ppoly.pyx
  Processing scipy/interpolate/_bspl.pyx
  Processing scipy/_lib/_ccallback_c.pyx
  Processing scipy/_lib/messagestream.pyx
  Processing scipy/_lib/_test_deprecation_call.pyx
  Processing scipy/_lib/_test_deprecation_def.pyx
  Processing scipy/io/matlab/mio_utils.pyx
  Processing scipy/io/matlab/mio5_utils.pyx
  Processing scipy/io/matlab/streams.pyx
  warning: _cython_special_custom.pxi:9:8: Unreachable code
  warning: _cython_special_custom.pxi:13:4: Unreachable code
  warning: _cython_special_custom.pxi:21:8: Unreachable code
  warning: _cython_special_custom.pxi:25:4: Unreachable code
  warning: _cython_special_custom.pxi:33:8: Unreachable code
  warning: _cython_special_custom.pxi:37:4: Unreachable code
  warning: _cython_special_custom.pxi:45:8: Unreachable code
  warning: _cython_special_custom.pxi:49:4: Unreachable code
  lapack_opt_info:
  lapack_mkl_info:
  customize UnixCCompiler
    libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
    NOT AVAILABLE
  
  openblas_lapack_info:
  customize UnixCCompiler
  customize UnixCCompiler
    libraries openblas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
    NOT AVAILABLE
  
  openblas_clapack_info:
  customize UnixCCompiler
  customize UnixCCompiler
    libraries openblas,lapack not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
    NOT AVAILABLE
  
  atlas_3_10_threads_info:
  Setting PTATLAS=ATLAS
  customize UnixCCompiler
    libraries lapack_atlas not found in /usr/local/lib
  customize UnixCCompiler
    libraries tatlas,tatlas not found in /usr/local/lib
  customize UnixCCompiler
    libraries lapack_atlas not found in /usr/lib
  customize UnixCCompiler
    libraries tatlas,tatlas not found in /usr/lib
  customize UnixCCompiler
    libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
  customize UnixCCompiler
    libraries tatlas,tatlas not found in /usr/lib/x86_64-linux-gnu
  <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
    NOT AVAILABLE
  
  atlas_3_10_info:
  customize UnixCCompiler
    libraries lapack_atlas not found in /usr/local/lib
  customize UnixCCompiler
    libraries satlas,satlas not found in /usr/local/lib
  customize UnixCCompiler
    libraries lapack_atlas not found in /usr/lib
  customize UnixCCompiler
    libraries satlas,satlas not found in /usr/lib
  customize UnixCCompiler
    libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
  customize UnixCCompiler
    libraries satlas,satlas not found in /usr/lib/x86_64-linux-gnu
  <class 'numpy.distutils.system_info.atlas_3_10_info'>
    NOT AVAILABLE
  
  atlas_threads_info:
  Setting PTATLAS=ATLAS
  customize UnixCCompiler
    libraries lapack_atlas not found in /usr/local/lib
  customize UnixCCompiler
    libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
  customize UnixCCompiler
    libraries lapack_atlas not found in /usr/lib
  customize UnixCCompiler
    libraries ptf77blas,ptcblas,atlas not found in /usr/lib
  customize UnixCCompiler
    libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
  customize UnixCCompiler
    libraries ptf77blas,ptcblas,atlas not found in /usr/lib/x86_64-linux-gnu
  <class 'numpy.distutils.system_info.atlas_threads_info'>
    NOT AVAILABLE
  
  atlas_info:
  customize UnixCCompiler
    libraries lapack_atlas not found in /usr/local/lib
  customize UnixCCompiler
    libraries f77blas,cblas,atlas not found in /usr/local/lib
  customize UnixCCompiler
    libraries lapack_atlas not found in /usr/lib
  customize UnixCCompiler
    libraries f77blas,cblas,atlas not found in /usr/lib
  customize UnixCCompiler
    libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
  customize UnixCCompiler
    libraries f77blas,cblas,atlas not found in /usr/lib/x86_64-linux-gnu
  <class 'numpy.distutils.system_info.atlas_info'>
    NOT AVAILABLE
  
  accelerate_info:
    NOT AVAILABLE
  
  /tmp/pip-build-env-fcsprb6_/lib/python3.7/site-packages/numpy/distutils/system_info.py:639: UserWarning:
      Atlas (http://math-atlas.sourceforge.net/) libraries not found.
      Directories to search for the libraries can be specified in the
      numpy/distutils/site.cfg file (section [atlas]) or by setting
      the ATLAS environment variable.
    self.calc_info()
  lapack_info:
  customize UnixCCompiler
    libraries lapack not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
    NOT AVAILABLE
  
  /tmp/pip-build-env-fcsprb6_/lib/python3.7/site-packages/numpy/distutils/system_info.py:639: UserWarning:
      Lapack (http://www.netlib.org/lapack/) libraries not found.
      Directories to search for the libraries can be specified in the
      numpy/distutils/site.cfg file (section [lapack]) or by setting
      the LAPACK environment variable.
    self.calc_info()
  lapack_src_info:
    NOT AVAILABLE
  
  /tmp/pip-build-env-fcsprb6_/lib/python3.7/site-packages/numpy/distutils/system_info.py:639: UserWarning:
      Lapack (http://www.netlib.org/lapack/) sources not found.
      Directories to search for the sources can be specified in the
      numpy/distutils/site.cfg file (section [lapack_src]) or by setting
      the LAPACK_SRC environment variable.
    self.calc_info()
    NOT AVAILABLE
  
  Traceback (most recent call last):
    File "<string>", line 1, in <module>
    File "/tmp/pip-install-1s08xzuz/scipy/setup.py", line 631, in <module>
      setup_package()
    File "/tmp/pip-install-1s08xzuz/scipy/setup.py", line 627, in setup_package
      setup(**metadata)
    File "/tmp/pip-build-env-fcsprb6_/lib/python3.7/site-packages/numpy/distutils/core.py", line 137, in setup
      config = configuration()
    File "/tmp/pip-install-1s08xzuz/scipy/setup.py", line 529, in configuration
      raise NotFoundError(msg)
  numpy.distutils.system_info.NotFoundError: No BLAS/LAPACK libraries found.
  To build Scipy from sources, BLAS & LAPACK libraries need to be installed.
  See site.cfg.example in the Scipy source directory and
  https://docs.scipy.org/doc/scipy/reference/building/index.html for details.
  
  ----------------------------------------
  Failed building wheel for scipy
  Running setup.py clean for scipy
  Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-1s08xzuz/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" clean --all:
  
  `setup.py clean` is not supported, use one of the following instead:
  
    - `git clean -xdf` (cleans all files)
    - `git clean -Xdf` (cleans all versioned files, doesn't touch
                        files that aren't checked into the git repo)
  
  Add `--force` to your command to use it anyway if you must (unsupported).
  
  
  ----------------------------------------
  Failed cleaning build dir for scipy
Successfully built numpy
Failed to build scipy
Installing collected packages: Werkzeug, MarkupSafe, Jinja2, zipp, typing-extensions, importlib-metadata, click, itsdangerous, Flask, gunicorn, psycopg2-binary, aniso8601, pytz, attrs, pyrsistent, importlib-resources, jsonschema, flask-restplus, numpy, pandas, chardet, urllib3, idna, certifi, requests, arrow, pyckson, py-zabbix, tzlocal, APScheduler, croniter, greenlet, sqlalchemy, joblib, scipy, threadpoolctl, scikit-learn
  Running setup.py install for scipy: started
    Running setup.py install for scipy: finished with status 'error'
    Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-1s08xzuz/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-ydpeax0t/install-record.txt --single-version-externally-managed --compile:
    
    Note: for reliable uninstall behaviour and dependency installation
    and uninstallation, please use pip instead of using
    `setup.py install`:
    
      - `pip install .`       (from a git repo or downloaded source
                               release)
      - `pip install scipy`   (last SciPy release on PyPI)
    
    
    Running from SciPy source directory.
    Cythonizing sources
    scipy/linalg/_generate_pyx.py: all files up-to-date
    scipy/special/_generate_pyx.py: all files up-to-date
    Running scipy/linalg/_generate_pyx.py
    Running scipy/stats/_generate_pyx.py
    Running scipy/special/_generate_pyx.py
    scipy/spatial/_voronoi.pyx has not changed
    scipy/stats/_boost/src/binom_ufunc.pyx has not changed
    scipy/stats/_boost/src/nbinom_ufunc.pyx has not changed
    scipy/stats/_boost/src/beta_ufunc.pyx has not changed
    scipy/special/_ellip_harm_2.pyx has not changed
    scipy/special/_test_round.pyx has not changed
    scipy/special/_comb.pyx has not changed
    scipy/special/cython_special.pyx has not changed
    scipy/special/_ufuncs_cxx.pyx has not changed
    scipy/special/_ufuncs.pyx has not changed
    scipy/interpolate/interpnd.pyx has not changed
    scipy/interpolate/_ppoly.pyx has not changed
    scipy/interpolate/_bspl.pyx has not changed
    scipy/_lib/_ccallback_c.pyx has not changed
    scipy/_lib/messagestream.pyx has not changed
    scipy/_lib/_test_deprecation_call.pyx has not changed
    scipy/_lib/_test_deprecation_def.pyx has not changed
    scipy/io/matlab/mio_utils.pyx has not changed
    scipy/cluster/_vq.pyx has not changed
    scipy/optimize/_group_columns.pyx has not changed
    scipy/optimize/_bglu_dense.pyx has not changed
    scipy/optimize/_trlib/_trlib.pyx has not changed
    scipy/optimize/cython_optimize/_zeros.pyx.in has not changed
    scipy/optimize/_highs/cython/src/_highs_constants.pyx has not changed
    scipy/optimize/_highs/cython/src/_highs_wrapper.pyx has not changed
    scipy/optimize/_lsq/givens_elimination.pyx has not changed
    scipy/sparse/_csparsetools.pyx.in has not changed
    scipy/sparse/csgraph/_matching.pyx has not changed
    scipy/sparse/csgraph/_min_spanning_tree.pyx has not changed
    scipy/sparse/csgraph/_flow.pyx has not changed
    scipy/sparse/csgraph/_shortest_path.pyx has not changed
    scipy/sparse/csgraph/_traversal.pyx has not changed
    scipy/sparse/csgraph/_reordering.pyx has not changed
    scipy/sparse/csgraph/_tools.pyx has not changed
    scipy/ndimage/src/_ni_label.pyx has not changed
    scipy/ndimage/src/_cytest.pyx has not changed
    scipy/stats/_sobol.pyx has not changed
    scipy/stats/_stats.pyx has not changed
    scipy/stats/_qmc_cy.pyx has not changed
    scipy/stats/biasedurn.pyx has not changed
    scipy/spatial/ckdtree.pyx has not changed
    scipy/spatial/qhull.pyx has not changed
    scipy/spatial/_hausdorff.pyx has not changed
    scipy/spatial/transform/rotation.pyx has not changed
    scipy/linalg/cython_blas.pyx has not changed
    scipy/linalg/_decomp_update.pyx.in has not changed
    scipy/linalg/_matfuncs_sqrtm_triu.pyx has not changed
    scipy/linalg/cython_lapack.pyx has not changed
    scipy/linalg/_solve_toeplitz.pyx has not changed
    scipy/fftpack/convolve.pyx has not changed
    scipy/signal/_sosfilt.pyx has not changed
    scipy/signal/_peak_finding_utils.pyx has not changed
    scipy/signal/_upfirdn_apply.pyx has not changed
    scipy/signal/_max_len_seq_inner.pyx has not changed
    scipy/signal/_spectral.pyx has not changed
    scipy/cluster/_optimal_leaf_ordering.pyx has not changed
    scipy/cluster/_hierarchy.pyx has not changed
    scipy/io/matlab/mio5_utils.pyx has not changed
    scipy/io/matlab/streams.pyx has not changed
    lapack_opt_info:
    lapack_mkl_info:
    customize UnixCCompiler
      libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
      NOT AVAILABLE
    
    openblas_lapack_info:
    customize UnixCCompiler
    customize UnixCCompiler
      libraries openblas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
      NOT AVAILABLE
    
    openblas_clapack_info:
    customize UnixCCompiler
    customize UnixCCompiler
      libraries openblas,lapack not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
      NOT AVAILABLE
    
    atlas_3_10_threads_info:
    Setting PTATLAS=ATLAS
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries tatlas,tatlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib
    customize UnixCCompiler
      libraries tatlas,tatlas not found in /usr/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
    customize UnixCCompiler
      libraries tatlas,tatlas not found in /usr/lib/x86_64-linux-gnu
    <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
      NOT AVAILABLE
    
    atlas_3_10_info:
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries satlas,satlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib
    customize UnixCCompiler
      libraries satlas,satlas not found in /usr/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
    customize UnixCCompiler
      libraries satlas,satlas not found in /usr/lib/x86_64-linux-gnu
    <class 'numpy.distutils.system_info.atlas_3_10_info'>
      NOT AVAILABLE
    
    atlas_threads_info:
    Setting PTATLAS=ATLAS
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib
    customize UnixCCompiler
      libraries ptf77blas,ptcblas,atlas not found in /usr/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
    customize UnixCCompiler
      libraries ptf77blas,ptcblas,atlas not found in /usr/lib/x86_64-linux-gnu
    <class 'numpy.distutils.system_info.atlas_threads_info'>
      NOT AVAILABLE
    
    atlas_info:
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries f77blas,cblas,atlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib
    customize UnixCCompiler
      libraries f77blas,cblas,atlas not found in /usr/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
    customize UnixCCompiler
      libraries f77blas,cblas,atlas not found in /usr/lib/x86_64-linux-gnu
    <class 'numpy.distutils.system_info.atlas_info'>
      NOT AVAILABLE
    
    accelerate_info:
      NOT AVAILABLE
    
    /tmp/pip-build-env-fcsprb6_/lib/python3.7/site-packages/numpy/distutils/system_info.py:639: UserWarning:
        Atlas (http://math-atlas.sourceforge.net/) libraries not found.
        Directories to search for the libraries can be specified in the
        numpy/distutils/site.cfg file (section [atlas]) or by setting
        the ATLAS environment variable.
      self.calc_info()
    lapack_info:
    customize UnixCCompiler
      libraries lapack not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
      NOT AVAILABLE
    
    /tmp/pip-build-env-fcsprb6_/lib/python3.7/site-packages/numpy/distutils/system_info.py:639: UserWarning:
        Lapack (http://www.netlib.org/lapack/) libraries not found.
        Directories to search for the libraries can be specified in the
        numpy/distutils/site.cfg file (section [lapack]) or by setting
        the LAPACK environment variable.
      self.calc_info()
    lapack_src_info:
      NOT AVAILABLE
    
    /tmp/pip-build-env-fcsprb6_/lib/python3.7/site-packages/numpy/distutils/system_info.py:639: UserWarning:
        Lapack (http://www.netlib.org/lapack/) sources not found.
        Directories to search for the sources can be specified in the
        numpy/distutils/site.cfg file (section [lapack_src]) or by setting
        the LAPACK_SRC environment variable.
      self.calc_info()
      NOT AVAILABLE
    
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-install-1s08xzuz/scipy/setup.py", line 631, in <module>
        setup_package()
      File "/tmp/pip-install-1s08xzuz/scipy/setup.py", line 627, in setup_package
        setup(**metadata)
      File "/tmp/pip-build-env-fcsprb6_/lib/python3.7/site-packages/numpy/distutils/core.py", line 137, in setup
        config = configuration()
      File "/tmp/pip-install-1s08xzuz/scipy/setup.py", line 529, in configuration
        raise NotFoundError(msg)
    numpy.distutils.system_info.NotFoundError: No BLAS/LAPACK libraries found.
    To build Scipy from sources, BLAS & LAPACK libraries need to be installed.
    See site.cfg.example in the Scipy source directory and
    https://docs.scipy.org/doc/scipy/reference/building/index.html for details.
    
    ----------------------------------------
Command "/usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-1s08xzuz/scipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-ydpeax0t/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-install-1s08xzuz/scipy/
The command '/bin/sh -c pip3 install -r requirements.txt' returned a non-zero code: 1
Cleaning up file based variables 00:00
ERROR: Job failed: command terminated with exit code 1

SciPy/NumPy/Python version information

1.7.2

Issue Analytics

  • State:closed
  • Created 2 years ago
  • Comments:9 (7 by maintainers)

github_iconTop GitHub Comments

1reaction
sergei3000commented, Nov 11, 2021

Hi guys, Sorry I’m still not answering your initial question, @tupui . I don’t have immediate access to the base image’s repo where all OS and Python stuff get installed. I requested access to it. Should get it today or tomorrow probably. Yeah, it’s weird that this BLAS problem is appearing with the introduction of 1.7.2. Will try upgrading pip though. Thanks for the advice, @andyfaff .

0reactions
sergei3000commented, Nov 11, 2021

So I got access to the base image’s repo, and it’s actually a rather evolved chain of images. I don’t think you want to bother yourself with looking into all those Dockerfiles. I tried upgrading pip in my project’s Dockerfile and that did really work. I don’t have to pin scipy to 1.7.1 anymore. So this may remain closed. Thanks a lot for your support, guys!

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