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deep logging not showing up

See original GitHub issue

Hello,

I tried to swap BBKNN over to the new logging, and while the timing aspect of it is functional, the deep refuses to cooperate. I checked with sc.pp.neighbors() just to make sure I’m not screwing things up massively, and it turns out that its deep also doesn’t work.

Any idea what’s going on here? I’m on python 3.6.7 on Bionic, jupyter 1.0.0, and all this:

scanpy==1.4.4 anndata==0.6.22.post1 umap==0.3.9 numpy==1.16.4 scipy==1.3.0 pandas==0.25.0 scikit-learn==0.21.2 statsmodels==0.10.1 python-igraph==0.7.1 louvain==0.6.1

Issue Analytics

State:
Created 4 years ago
Comments:7 (7 by maintainers)

Top GitHub Comments

1reaction

ktpolanskicommented, Jul 29, 2019

Can confirm everything’s operational now, so all’s well that ends well.

0reactions

flying-sheepcommented, Jul 29, 2019

Np, sorry it took so long! I replied only to the fractional-seconds part before and missed your new comment 😿

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