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Fix and export or delete rna_velocity
See original GitHub issueWe have unused and untested RNA velocity code in #130.
Our plotting functions accept the arrows argument which expects a Delta_ from velocyto.
I guess everything here is superseded by scvelo, so should we just get rid of the rna_velocity code and make arrows work with scvelo?
Issue Analytics
- State:
- Created 4 years ago
- Reactions:1
- Comments:7 (5 by maintainers)
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It’s a thing, not yet the thing. For directed PAGA follow this while always double checking with your single cell velocities as it is not yet perfectly robust.
@VolkerBergen Directed PAGA is already a thing? Is there an example script for this somewhere?