pp.normalize_geometric(protein)

Hi Scanpy team, I am trying to analyse CTE-seq data. At the nomalization step of the protein data, the attibute normalize_geometric is not recognize. Could this be a version issue? Thank you for your help!

sc.pp.normalize_geometric(protein)

<!-- Put your Error output in this code block (if applicable, else delete the block): -->
```pytb
...AttributeError                            Traceback (most recent call last)
<ipython-input-80-db93ca6d0f1d> in <module>
----> 1 sc.pp.normalize_geometric(protein)

AttributeError: module 'scanpy.preprocessing' has no attribute 'normalize_geometric'

Versions:

scanpy==1.4.7.dev30+g668b6776 anndata==0.7.1 umap==0.3.10 numpy==1.16.2 scipy==1.3.0 pandas==0.24.2 scikit-learn==0.22.2.post1 statsmodels==0.10.1 python-igraph==0.7.1 louvain==0.6.1

[maximz]

Actually there’s a nice ongoing thread about this at #1117

[andreas-wilm]

normalize_geometric() is still mentioned in the tutorial at https://scanpy-tutorials.readthedocs.io/en/multiomics/cite-seq/pbmc5k.html