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read_10x_mtx with different prefix

See original GitHub issue

Hi scanpy team,

I am not sure if I just missed it, but there does not seem to be a way to specify a different filename for .mtx files. For instance, assuming I have multiple .mtx files in a folder sample1.matrix.mtx, sample2.matrix.mtx ... with corresponding sample1.genes.tsv and sample1.barcodes.tsv. It would be useful to be able either specify matrix/genes/barcodes filename, etc. and/or a suffix for the files.

Thanks in advance, Alex

Issue Analytics

State:
Created 4 years ago
Comments:7 (3 by maintainers)

Top GitHub Comments

1reaction

flying-sheepcommented, Nov 8, 2019

OK, let’s do this.

0reactions

annashch-insitrocommented, May 19, 2022

Are there plans to incorporate this feature? Would be very helpful to specify the filenames to read in – a lot of GEO data doesn’t follow the expected format.

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