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Saving then reading turns list into numpy.ndarray?
See original GitHub issueHey!
I just noticed that saving and then reading an anndata object turns a list in adata.uns['velocity_settings']['embeddings'] into a numpy.ndarray, which then fails in an scvelo function. Is this a scanpy or an anndata issue? It seems related to a lot of the stuff I’ve been reading.
Issue Analytics
- State:
- Created 4 years ago
- Comments:8 (8 by maintainers)
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Saving then reading turns list into numpy.ndarray? · Issue #887
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Thanks, Malte. h5py doesn’t store as lists. Fixed now in scvelo.
Okay… scvelo uses
adata.uns['velocity_settings']['embeddings'].extend()which only works on lists.@VolkerBergen shall i report this again in the
scvelorepo or is this sufficient for you?