Cannot install Slicer kernel in Jupyter
See original GitHub issueI am getting the following error message when trying to install the Slicer kernel from SlicerJupyter extension in Slicer.
File kernel-template.json
doesn’t exist in the extension directory.
[DEBUG][Qt] 05.11.2018 11:52:47 [] (unknown:0) - Switch to module: "JupyterKernel"
[WARNING][Qt] 05.11.2018 11:52:48 [] (unknown:0) - QIODevice::read (QFile, "/Applications/Slicer_4.11_nightly.app/Contents/Extensions-27534/SlicerJupyter/share/Slicer-4.11/qt-loadable-modules/JupyterKernel/Slicer-4.11/kernel-template.json"): device not open
[WARNING][Qt] 05.11.2018 11:52:48 [] (unknown:0) - virtual bool qSlicerJupyterKernelModule::installSlicerKernel(QString) failed: time out while launching process "/jupyter-kernelspec"
[CRITICAL][FD] 05.11.2018 12:01:46 [] (unknown:0) - objc[15905]: Class FIFinderSyncExtensionHost is implemented in both /System/Library/PrivateFrameworks/FinderKit.framework/Versions/A/FinderKit (0x7fffa0f27c90) and /System/Library/PrivateFrameworks/FileProvider.framework/OverrideBundles/FinderSyncCollaborationFileProviderOverride.bundle/Contents/MacOS/FinderSyncCollaborationFileProviderOverride (0x1219c9cd8). One of the two will be used. Which one is undefined.
[WARNING][Qt] 05.11.2018 12:04:04 [] (unknown:0) - QIODevice::read (QFile, "/Applications/Slicer_4.11_nightly.app/Contents/Extensions-27534/SlicerJupyter/share/Slicer-4.11/qt-loadable-modules/JupyterKernel/Slicer-4.11/kernel-template.json"): device not open
[WARNING][Qt] 05.11.2018 12:04:04 [] (unknown:0) - virtual bool qSlicerJupyterKernelModule::installSlicerKernel(QString) failed: time out while launching process "/usr/local/bin/python/jupyter-kernelspec"
I installed SlicerJupyter from the extension manager.
Issue Analytics
- State:
- Created 5 years ago
- Comments:27 (14 by maintainers)
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After uninstall/reinstall pyzmq we were able to install the kernel
@che85 Updated SlicerJupyter extension (with more detailed logging) is available in the extension manager. Please test kernel installation using that and let me know the results. Thanks!