Q: Can 2-line spacing around `configfile:` be switched off? Too much whitespace

I just applied snakefmt to nextstrain/monkeypox. While I love the idea of a snakemake formatter and you’ve done a great job, the result for our main Snakefile is a bit too whitespacy.

In particular, it’s ridiculous that there is whitesapce between if not config and configfile:

And two lines between build_dir = "results" and auspice_dir = "auspice is too much for my taste.

Is there a way to configure this? I couldn’t figure out what all the config options are from the docs - all I could find were the CLI options, is there more?

from packaging import version
from augur.__version__ import __version__ as augur_version
import sys

min_version = "16.0.0"
if version.parse(augur_version) < version.parse(min_version):
    print("This pipeline needs a newer version of augur than you currently have...")
    print(f"Current augur version: {augur_version}. Minimum required: {min_version}")
    sys.exit(1)

if not config:

    configfile: "config/config_hmpxv1.yaml"


build_dir = "results"


auspice_dir = "auspice"

[bricoletc]

Hey @mbhall88 i’m afraid i won’t be able to cover this before i submit my thesis, so early october. i have to invest all resources into that until then!

[mbhall88]

@bricoletc do you think you’ll have a chance to look at this? I have added a failing test and opened a draft PR at #151. So maybe add on to that if you can?

It’s weird the formatter is passing build_dir and auspice_dir to black separately, but when it gets to auspice_dir it thinks it is still following the configfile keyword I think? I’m a bit lost.