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Chose template mode when exporting to phy

See original GitHub issue

Hi,

When using the export_to_phy function, the template mode will automatically be 'median', and I don’t believe there is an argument to change it.

Could it be possible to either:

Have an argument in the export_to_phy function to specify the template mode
Set the default template mode in WaveformExtractor.set_params() (which would be really nice I think)

The problem for me is that the median is very computationally expensive for large clusters (> 300,000 spikes) and takes a lot of time, whereas I am ok with the mean (which can save me tens of minutes).

Thank you!

Issue Analytics

State:
Created 2 years ago
Comments:8 (8 by maintainers)

Top GitHub Comments

1reaction

DradeAWcommented, Sep 7, 2021

Thanks for the quick answer!

Yes I can make a PR for it, but not right now. When I’ll have some free time, I’ll make the PR and link it to this issue.

Btw great job with the refactoring, it looks really great!

0reactions

DradeAWcommented, Sep 8, 2021

@alejoe91 @samuelgarcia Thank you for the quick and helpful answers!

I think I’ll make a seperate issue for it to keep things clear.

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