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Annotate_dataloader fails without misc attribute
See original GitHub issueI wrote a dataloader and ran validate_dataloader on my yaml file. The resulting new yaml file does not contain any arguments for misc
feature_wise:
gene_id_ensembl_var_key:
gene_id_symbols_var_key: "index"
misc:
meta:
version: "1.0"
which causes problems later when running annotate_dataloader here since there is no value for misc:
https://github.com/theislab/sfaira/blob/dab9cb3f6d89dc6c6b52f9ce23c9a7e938e4d91b/sfaira/data/utils.py#L121
TypeError: 'NoneType' object is not iterable
Issue Analytics
- State:
- Created 2 years ago
- Reactions:1
- Comments:5 (5 by maintainers)
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Ok, I think there may be a couple of improvements on dev still and it could be that this bug is already addressed there!
@davidsebfischer just checked as well. Can’t see it in dev anymore. Should be good to go with a new release 😃