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Installation problems on Mac M1 due to tensorflow, and Linux due to Python Levenshtein

See original GitHub issue

Describe the bug Installing sfaira via pip and trying to output help gives this error message:

(base) % sfaira -h
zsh: illegal hardware instruction  sfaira -h
(base) % /opt/anaconda3/lib/python3.9/multiprocessing/resource_tracker.py:216: UserWarning: resource_tracker: There appear to be 4 leaked semaphore objects to clean up at shutdown

I assume it’s due to Python 3.9, will confirm by checking with a 3.8 environment a bit later. Compatibility with 3.9 would still be great! 😅

System:

OS: macOS 12.0.1
Language Version: Python 3.9
Virtual environment: Conda

Issue Analytics

State:
Created 2 years ago
Comments:7 (5 by maintainers)

Top GitHub Comments

1reaction

falexwolfcommented, Mar 9, 2022

Thank you! I’ll try to get it to work!

Also appreciate you moving to make TensorFlow an optional dependency!

0reactions

davidsebfischercommented, Mar 9, 2022

Yes, this preinstallation was successful here https://github.com/theislab/sfaira/issues/377, I would imagine it is easier now though. We are also going to make tf an optional dependency fairly soon, we are wrapping up some improvements in the data submodule right now and will then make some changes to the models submodule (where this is imported).

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