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Import GeoPandas throws error with Fiona?Jupyter Notebook
See original GitHub issueHi, I have tried for hours reinstalling GeoPandas, reinstalling anaconda, Jupyter notebook etc and cannot solve this issue. I am running Jupyter notebook and I am trying to import GeoPandas after installing. I get this error:
---
ImportError Traceback (most recent call last)
<ipython-input-2-a62d01c1d62e> in <module>
----> 1 import geopandas as gpd
/anaconda3/envs/new/lib/python3.7/site-packages/geopandas/__init__.py in <module>
2 from geopandas.geodataframe import GeoDataFrame
3
----> 4 from geopandas.io.file import read_file
5 from geopandas.io.sql import read_postgis
6 from geopandas.tools import sjoin
/anaconda3/envs/new/lib/python3.7/site-packages/geopandas/io/file.py in <module>
1 import os
2
----> 3 import fiona
4 import numpy as np
5 import six
/anaconda3/envs/new/lib/python3.7/site-packages/fiona/__init__.py in <module>
67 from six import string_types
68
---> 69 from fiona.collection import Collection, BytesCollection, vsi_path
70 from fiona._drivers import driver_count, GDALEnv
71 from fiona.drvsupport import supported_drivers
/anaconda3/envs/new/lib/python3.7/site-packages/fiona/collection.py in <module>
7
8 from fiona import compat
----> 9 from fiona.ogrext import Iterator, ItemsIterator, KeysIterator
10 from fiona.ogrext import Session, WritingSession
11 from fiona.ogrext import (
ImportError: dlopen(/anaconda3/envs/new/lib/python3.7/site-packages/fiona/ogrext.cpython-37m-darwin.so, 2): Library not loaded: @rpath/libkea.1.4.7.dylib
Referenced from: /anaconda3/envs/new/lib/libgdal.20.dylib
Reason: image not found
Conda List:
# packages in environment at /anaconda3/envs/new:
#
# Name Version Build Channel
appnope 0.1.0 py37_0
backcall 0.1.0 py37_0
blas 1.0 mkl
bleach 3.0.2 py37_0
boost-cpp 1.67.0 h3a22d5f_0 conda-forge
bzip2 1.0.6 1 conda-forge
ca-certificates 2018.10.15 ha4d7672_0 conda-forge
cairo 1.14.12 h276e583_5 conda-forge
certifi 2018.10.15 py37_1000 conda-forge
click 7.0 py_0 conda-forge
click-plugins 1.0.4 py_0 conda-forge
cligj 0.5.0 py_0 conda-forge
curl 7.62.0 h74213dd_0 conda-forge
cycler 0.10.0 py_1 conda-forge
dbus 1.13.2 h760590f_1
decorator 4.3.0 py37_0
descartes 1.1.0 py_2 conda-forge
entrypoints 0.2.3 py37_2
expat 2.2.6 h0a44026_0
fiona 1.7.13 py37hb00a9d7_3 conda-forge
fontconfig 2.13.1 hce039c3_0 conda-forge
freetype 2.9.1 h6debe1e_4 conda-forge
freexl 1.0.5 h470a237_2 conda-forge
gdal 2.2.4 py37h6440ff4_1
geopandas 0.4.0 py_1 conda-forge
geos 3.6.2 hfc679d8_3 conda-forge
gettext 0.19.8.1 h15daf44_3
giflib 5.1.4 h470a237_1 conda-forge
glib 2.56.2 hd9629dc_0
hdf4 4.2.13 0 conda-forge
hdf5 1.10.2 hc401514_2 conda-forge
icu 58.2 h4b95b61_1
intel-openmp 2019.0 118
ipykernel 5.1.0 py37h39e3cac_0
ipython 7.1.1 py37h39e3cac_0
ipython_genutils 0.2.0 py37_0
ipywidgets 7.4.2 py37_0
jedi 0.13.1 py37_0
jinja2 2.10 py37_0
jpeg 9b he5867d9_2
json-c 0.13.1 h470a237_1 conda-forge
jsonschema 2.6.0 py37_0
jupyter 1.0.0 py37_7
jupyter_client 5.2.3 py37_0
jupyter_console 6.0.0 py37_0
jupyter_core 4.4.0 py37_0
kealib 1.4.9 h0bee7d0_2 conda-forge
kiwisolver 1.0.1 py37h2d50403_2 conda-forge
krb5 1.16.2 hbb41f41_0 conda-forge
libcurl 7.62.0 hbdb9355_0 conda-forge
libcxx 4.0.1 hcfea43d_1
libcxxabi 4.0.1 hcfea43d_1
libdap4 3.19.1 h18059cb_1 conda-forge
libedit 3.1.20170329 hb402a30_2
libffi 3.2.1 h475c297_4
libgdal 2.2.4 h7b1ea53_1
libgfortran 3.0.1 h93005f0_2
libiconv 1.15 hdd342a3_7
libkml 1.3.0 hccc92b1_8 conda-forge
libnetcdf 4.6.1 h5e45101_3 conda-forge
libpng 1.6.35 ha441bb4_0
libpq 10.5 hf16a0db_0 conda-forge
libsodium 1.0.16 h3efe00b_0
libspatialindex 1.8.5 hfc679d8_3 conda-forge
libspatialite 4.3.0a ha12ebda_19
libssh2 1.8.0 h5b517e9_2 conda-forge
libtiff 4.0.9 he6b73bb_1 conda-forge
libuuid 1.0.3 1 conda-forge
libxml2 2.9.8 h422b904_5 conda-forge
markupsafe 1.0 py37h1de35cc_1
matplotlib 2.2.3 py37h0e0179f_0 conda-forge
mistune 0.8.4 py37h1de35cc_0
mkl 2019.0 118
mkl_fft 1.0.4 py37h5d10147_1
mkl_random 1.0.1 py37h5d10147_1
munch 2.3.2 py_0 conda-forge
nbconvert 5.3.1 py37_0
nbformat 4.4.0 py37_0
ncurses 6.1 h0a44026_0
notebook 5.7.0 py37_0
numpy 1.15.1 py37h6a91979_0
numpy-base 1.15.1 py37h8a80b8c_0
openjpeg 2.3.0 h316dc23_3 conda-forge
openssl 1.0.2p h470a237_1 conda-forge
pandas 0.23.4 py37h6440ff4_0
pandoc 2.2.3.2 0
pandocfilters 1.4.2 py37_1
parso 0.3.1 py37_0
pcre 8.42 h378b8a2_0
pexpect 4.6.0 py37_0
pickleshare 0.7.5 py37_0
pip 10.0.1 py37_0
pixman 0.34.0 h470a237_3 conda-forge
poppler 0.65.0 ha097c24_1
poppler-data 0.4.9 0 conda-forge
proj4 5.0.1 0 conda-forge
prometheus_client 0.4.2 py37_0
prompt_toolkit 2.0.7 py37_0
psycopg2 2.7.6.1 py37hdffb7b8_0 conda-forge
ptyprocess 0.6.0 py37_0
pygments 2.2.0 py37_0
pyparsing 2.3.0 py_0 conda-forge
pyproj 1.9.5.1 py37h833a5d7_1
pyqt 5.9.2 py37h655552a_2
pysal 1.14.4.post2 py37_1001 conda-forge
python 3.7.1 h46c1a51_0 conda-forge
python-dateutil 2.7.3 py37_0
pytz 2018.5 py37_0
pyzmq 17.1.2 py37h1de35cc_0
qt 5.9.6 h45cd832_2
qtconsole 4.4.2 py37_0
readline 7.0 h1de35cc_5
rtree 0.8.3 py37_1000 conda-forge
scipy 1.1.0 py37h28f7352_1
send2trash 1.5.0 py37_0
setuptools 40.2.0 py37_0
shapely 1.6.4 py37h164cb2d_0 conda-forge
sip 4.19.8 py37h0a44026_0
six 1.11.0 py37_1
sqlalchemy 1.2.14 py37h470a237_0 conda-forge
sqlite 3.25.3 ha441bb4_0
terminado 0.8.1 py37_1
testpath 0.4.2 py37_0
tk 8.6.8 ha441bb4_0
tornado 5.1.1 py37h1de35cc_0
traitlets 4.3.2 py37_0
wcwidth 0.1.7 py37_0
webencodings 0.5.1 py37_1
wheel 0.31.1 py37_0
widgetsnbextension 3.4.2 py37_0
xerces-c 3.2.2 h5d6a6da_0 conda-forge
xz 5.2.4 h1de35cc_4
zeromq 4.2.5 h0a44026_1
zlib 1.2.11 hf3cbc9b_2
Issue Analytics
- State:
- Created 5 years ago
- Comments:8 (4 by maintainers)
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This is what I would do:
You can also create a
environment.ymlfile for the env instead of listing them in the CLI.@mmaari I had the same issue a month ago. I solved it be installing specific version of geopandas and some other packages. I would not know how to do it for the updated versions. but this list of packages runs smoothly together:
conda create -n GIS python=3.6 geopandas=0.4.0 gdal=2.2.4 ipykernel=4.8.2 jupyter geoplot=0.1.2