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use individual tables when writing out vcf files
See original GitHub issueCurrently write_vcf has a ploidy argument, and will assume that adjacent samples belong to the same individual. This should be deprecated after we provide a make_individuals method, and write_vcf should have an argument that toggles whether to write individuals or genomes (maybe: output either monoploid by default or phased or `unphased).
Issue Analytics
- State:
- Created 5 years ago
- Comments:6 (6 by maintainers)
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Right. Well, we should output diploid genotypes based on individuals in a way that works well with scikit-allel.
Closed in #286.