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Add `pyani tree` subcommand

See original GitHub issue

Summary:

Add Newick tree output to pyani.

Description:

In #186 a question was raised about generating trees from pyani directly. At the moment this isn’t implemented, but could be done fairly readily. One API implementation for writing might be:

pyani tree --formats [newick,nexus] <output_dir> <run ID>

or for graphical output:

pyani plot --formats [png,pdf] --method ete3 <output_dir> <run ID>

Current Output:

Not implemented

pyani Version:

v0.3+

Issue Analytics

State:
Created 3 years ago
Reactions:1
Comments:12 (12 by maintainers)

Top GitHub Comments

1reaction

widdowquinncommented, Oct 21, 2021

Can confirm the format works with FigTree - thanks @baileythegreen

1reaction

widdowquinncommented, Oct 20, 2021

@baileythegreen is working on this, just now. There should be a pyani tree option in v0.3 coming soon.

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