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Improve flexibility and consistency of cell plotting

See original GitHub issue

ATM for plotting cells one would need to pass a pandas dataframe with the x,y,z columns, or a list of column names specifying col 1,2, and 3.

  • The first option should be replaced for consistency with column names ap, si, lr
  • The second option is quite redundant syntax-wise, and should be replaced with just supporting a (n_cells, 3) shape numpy array (so that the user can just invoke add_cells(df[[col1, col2, col3]].values)

can make a PR fir this in the next days! But this will potentially break some code for the users, exp @adamltyson . Should probably go through a deprecation phase.

Issue Analytics

  • State:closed
  • Created 3 years ago
  • Reactions:1
  • Comments:8 (4 by maintainers)

github_iconTop GitHub Comments

vigjicommented, Oct 27, 2020

Yes, will do after Friday!

Regarding passing a numpy array, the reason why it’s the way it is at the moment is that users can pass a df and use another column as metadata for coloring.

I think this is useful but I would just point users in the docstring to how to label the columns for this to work!

FedeClaudicommented, Nov 23, 2020

Addressed in brainrender 2.0

Read more comments on GitHub >

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