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[BUG] cellfinder_view throws a brainrender error "No module named 'brainrender.Utils.image"

See original GitHub issue

Describe the bug When I run cellfinder_view , I get the following error:

(cellfinder) C:\Users\Administrator>cellfinder_view
Traceback (most recent call last):
  File "c:\users\administrator\miniconda3\envs\cellfinder\lib\runpy.py", line 193, in _run_module_as_main
    "__main__", mod_spec)
  File "c:\users\administrator\miniconda3\envs\cellfinder\lib\runpy.py", line 85, in _run_code
    exec(code, run_globals)
  File "C:\Users\Administrator\miniconda3\envs\cellfinder\Scripts\cellfinder_view.exe\__main__.py", line 4, in <module>
  File "c:\users\administrator\miniconda3\envs\cellfinder\lib\site-packages\neuro\visualise\viewer.py", line 23, in <module>
    from neuro.visualise.napari_tools.callbacks import display_brain_region_name
  File "c:\users\administrator\miniconda3\envs\cellfinder\lib\site-packages\neuro\visualise\napari_tools\callbacks.py", line 7, in <module>
    from neuro.segmentation.manual_segmentation.man_seg_tools import (
  File "c:\users\administrator\miniconda3\envs\cellfinder\lib\site-packages\neuro\segmentation\manual_segmentation\man_seg_tools.py", line 15, in <module>
    from neuro.visualise.brainrender_tools import (
  File "c:\users\administrator\miniconda3\envs\cellfinder\lib\site-packages\neuro\visualise\brainrender_tools.py", line 3, in <module>
    from brainrender.Utils.image import reorient_image, marching_cubes_to_obj
ModuleNotFoundError: No module named 'brainrender.Utils.image'

Desktop (please complete the following information): Windows 10

Issue Analytics

State:
Created 3 years ago
Comments:6 (3 by maintainers)

Top GitHub Comments

1reaction

adamltysoncommented, Aug 17, 2020

Hi @rdbcasillas, this should be fixed by installing pip install neuro==0.0.19

0reactions

FedeClaudicommented, Jul 30, 2020

okay, thanks and sorry again 😃

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