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Scaling the dot size based on number of points

See original GitHub issue

It’d be really nice to decrease the dotsize when visualizing large datasets and increase it for smaller ones.

We have a simple scaling in scanpy ( which is 120000 / n where n is the number of cells. This leads to very big dots when dataset is very small, so you might want to limit it via min() or max().

Issue Analytics

  • State:closed
  • Created 4 years ago
  • Comments:7 (4 by maintainers)

github_iconTop GitHub Comments

liaprins-czicommented, Aug 9, 2019

Yeah I think that ^^^ would be good. It’d be confusing to have the deselected size scale up for a small dataset and end up the same size as a default dot of a large dataset.

colinmegillcommented, Aug 8, 2019

@bkmartinjr @liaprins-czi this will need to take into consideration all three dot sizes:

  • default
  • deselected
  • hover
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