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jpeek fails to run

See original GitHub issue

I fail to run jpeek. I end up in exceptions when runnnig the maven repository jar and compiled sources.

When running the repository jar, given in the readme, some class is reported missing:

$ java -jar ~/tools/jpeek/jpeek-0.1-jar-with-dependencies.jar . /tmp/jpeek
Exception in thread "main" java.io.IOException: java.io.UncheckedIOException: java.io.IOException: java.lang.IllegalStateException: javassist.NotFoundException: com.company.releng.tools.deploy.locations.DeployLocations
        at org.cactoos.func.IoCheckedFunc.apply(IoCheckedFunc.java:74)
        at org.cactoos.scalar.IoCheckedScalar.value(IoCheckedScalar.java:60)
        at org.jpeek.App.analyze(App.java:96)
        at org.jpeek.Main.main(Main.java:61)
Caused by: java.io.UncheckedIOException: java.io.IOException: java.lang.IllegalStateException: javassist.NotFoundException: com.company.releng.tools.deploy.locations.DeployLocations
        at org.cactoos.func.UncheckedFunc.apply(UncheckedFunc.java:61)
        at org.cactoos.iterator.Mapped.next(Mapped.java:70)
        at org.jpeek.metrics.cohesion.CAMC.metrics(CAMC.java:118)
        at org.jpeek.metrics.cohesion.CAMC.xembly(CAMC.java:91)
        at org.jpeek.App.lambda$analyze$0(App.java:85)
        at org.cactoos.func.FuncOf.lambda$new$3(FuncOf.java:88)
        at org.cactoos.func.FuncOf.apply(FuncOf.java:104)
        at org.cactoos.scalar.And.lambda$null$0(And.java:101)
        at org.cactoos.scalar.And.value(And.java:127)
        at org.cactoos.scalar.And.value(And.java:52)
        at org.cactoos.func.IoCheckedFunc.apply(IoCheckedFunc.java:66)
        ... 3 more
Caused by: java.io.IOException: java.lang.IllegalStateException: javassist.NotFoundException: com.company.releng.tools.deploy.locations.DeployLocations
        at org.cactoos.func.IoCheckedFunc.apply(IoCheckedFunc.java:74)
        at org.cactoos.func.UncheckedFunc.apply(UncheckedFunc.java:59)
        ... 13 more
Caused by: java.lang.IllegalStateException: javassist.NotFoundException: com.company.releng.tools.deploy.locations.DeployLocations
        at org.jpeek.metrics.cohesion.CAMC.metric(CAMC.java:146)
        at org.cactoos.func.IoCheckedFunc.apply(IoCheckedFunc.java:66)
        ... 14 more
Caused by: javassist.NotFoundException: com.company.releng.tools.deploy.locations.DeployLocations
        at javassist.ClassPool.get(ClassPool.java:445)
        at javassist.bytecode.Descriptor.toCtClass(Descriptor.java:592)
        at javassist.bytecode.Descriptor.getParameterTypes(Descriptor.java:439)
        at javassist.CtBehavior.getParameterTypes(CtBehavior.java:298)
        at org.jpeek.metrics.cohesion.CAMC.methods(CAMC.java:196)
        at org.jpeek.metrics.cohesion.CAMC.cohesion(CAMC.java:157)
        at org.jpeek.metrics.cohesion.CAMC.metric(CAMC.java:142)
        ... 15 more

When trying to build the tool from source using mvn clean package , the build fails due to errors in tests:

# Build tests fail

Tests in error: 
  AppTest.createsXmlReports:50 » IO java.lang.IllegalArgumentException: 40 error...
  MainTest.createsXmlReports:47 » IO java.lang.IllegalArgumentException: 40 erro...

Tests run: 11, Failures: 4, Errors: 2, Skipped: 0

Building with mvn clean package -DskipTests produces the desired jar.

However when running this file, another exception occurs:

~/git/master$ java -jar ~/source/jpeek/target/jpeek-1.0-SNAPSHOT-jar-with-dependencies.jar . /tmp/jpeek
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
Exception in thread "main" java.io.IOException: java.io.UncheckedIOException: java.io.IOException: javassist.NotFoundException: org.apache.commons.cli.CommandLine
        at org.cactoos.func.IoCheckedFunc.apply(IoCheckedFunc.java:74)
        at org.cactoos.scalar.IoCheckedScalar.value(IoCheckedScalar.java:60)
        at org.jpeek.App.analyze(App.java:114)
        at org.jpeek.Main.main(Main.java:61)
Caused by: java.io.UncheckedIOException: java.io.IOException: javassist.NotFoundException: org.apache.commons.cli.CommandLine
        at org.cactoos.func.UncheckedFunc.apply(UncheckedFunc.java:61)
        at org.cactoos.iterator.Mapped.next(Mapped.java:70)
        at org.jpeek.metrics.JavassistClasses.metrics(JavassistClasses.java:129)
        at org.jpeek.metrics.JavassistClasses.xembly(JavassistClasses.java:101)
        at org.jpeek.metrics.cohesion.CAMC.xembly(CAMC.java:76)
        at org.jpeek.App.xml(App.java:134)
        at org.jpeek.App.lambda$analyze$0(App.java:102)
        at org.cactoos.func.FuncOf.lambda$new$3(FuncOf.java:88)
        at org.cactoos.func.FuncOf.apply(FuncOf.java:104)
        at org.cactoos.scalar.And.lambda$null$0(And.java:101)
        at org.cactoos.scalar.And.value(And.java:127)
        at org.cactoos.scalar.And.value(And.java:52)
        at org.cactoos.func.IoCheckedFunc.apply(IoCheckedFunc.java:66)
        ... 3 more
Caused by: java.io.IOException: javassist.NotFoundException: org.apache.commons.cli.CommandLine
        at org.cactoos.func.IoCheckedFunc.apply(IoCheckedFunc.java:74)
        at org.jpeek.metrics.JavassistClasses.metric(JavassistClasses.java:147)
        at org.cactoos.func.IoCheckedFunc.apply(IoCheckedFunc.java:66)
        at org.cactoos.func.UncheckedFunc.apply(UncheckedFunc.java:59)
        ... 15 more
Caused by: javassist.NotFoundException: org.apache.commons.cli.CommandLine
        at javassist.ClassPool.get(ClassPool.java:445)
        at javassist.bytecode.Descriptor.toCtClass(Descriptor.java:592)
        at javassist.bytecode.Descriptor.getParameterTypes(Descriptor.java:439)
        at javassist.CtBehavior.getParameterTypes(CtBehavior.java:298)
        at org.jpeek.metrics.cohesion.CAMC.methods(CAMC.java:139)
        at org.jpeek.metrics.cohesion.CAMC.cohesion(CAMC.java:86)
        at org.cactoos.func.IoCheckedFunc.apply(IoCheckedFunc.java:66)
        ... 18 more

Am I missing something or did I catch the project in an unfortunate state?