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processFulltextAssetDocument graphic url incorrectly including temporary (sub-)directory

See original GitHub issue

Using processFulltextAssetDocument we can download a zip with the XML and related image resources.

The url in the XML seem to include a temporary sub-directory, e.g. QwmZmbXzY9.lxml_data/image-1.png instead of image-1.png

Example document 003525v1 (bioRxiv 10k training), generates the following partial TEI XML.

<figure xmlns="http://www.tei-c.org/ns/1.0" xml:id="fig_1"><head>Figure 1 :</head><label>1</label><figDesc>Figure 1: Network-based analysis of omic data to model the processes connecting genetic variation to disease.</figDesc><graphic url="QwmZmbXzY9.lxml_data/image-1.png" coords="12,72.00,178.57,319.30,504.00" type="bitmap" /></figure>

(The zip file doesn’t contain any subdirectories)

Example command:

curl -v \
  --output "003525v1.zip" \
  --form input=@003525v1.pdf \
  https://<host>:<port>/api/processFulltextAssetDocument

(I have only tried that with the cloud.science-miner.com instance)

BTW the FAQ seem to be listing the API as deprecated. Not sure if that is still correct?

Issue Analytics

State:
Created 2 years ago
Reactions:1
Comments:10 (4 by maintainers)

Top GitHub Comments

1reaction

suyogrichacommented, Mar 10, 2022

Patrice is it possible for you to update this on https://hub.docker.com/r/grobid/grobid/

1reaction

suyogrichacommented, Feb 17, 2022

Thanks a lot, Patrice. You are amazing. Any chances of updating this to https://hub.docker.com/r/grobid/ ?

Actually, I wish to use https://grobid.readthedocs.io/en/latest/Deep-Learning-models/ too and I am on M1 Macbook Max (Apple Silicon). It would be too complex for me to install everything.