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anipose label-3d (ImportError: DLL load failed: The specified module could not be found.)
See original GitHub issueHi,
I’m trying to test the anipose tutorial with “hand-demo-dlc” and “hand-demo-unfilled” folders. I’m currently using Windows 10 Education Version 21H1. When I try to launch “anipose label-3d” it shows the error:
Warning: QT_DEVICE_PIXEL_RATIO is deprecated. Instead use:
QT_AUTO_SCREEN_SCALE_FACTOR to enable platform plugin controlled per-screen factors.
QT_SCREEN_SCALE_FACTORS to set per-screen factors.
QT_SCALE_FACTOR to set the application global scale factor.
Traceback (most recent call last):
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\vtkmodules\vtkCommonCore.py", line 5, in <module>
from .vtkCommonCorePython import *
ImportError: DLL load failed: The specified module could not be found.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Users\nini\Anaconda3\envs\dlc\lib\runpy.py", line 193, in _run_module_as_main
"__main__", mod_spec)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\runpy.py", line 85, in _run_code
exec(code, run_globals)
File "C:\Users\nini\Anaconda3\envs\dlc\Scripts\anipose.exe\__main__.py", line 7, in <module>
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\click\core.py", line 1128, in __call__
return self.main(*args, **kwargs)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\click\core.py", line 1053, in main
rv = self.invoke(ctx)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\click\core.py", line 1659, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\click\core.py", line 1395, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\click\core.py", line 754, in invoke
return __callback(*args, **kwargs)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\click\decorators.py", line 84, in new_func
return ctx.invoke(f, obj, *args, **kwargs)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\click\core.py", line 754, in invoke
return __callback(*args, **kwargs)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\anipose\anipose.py", line 257, in label_3d
from .label_videos_3d import label_videos_3d_all
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\anipose\label_videos_3d.py", line 3, in <module>
from mayavi import mlab
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\mayavi\mlab.py", line 16, in <module>
from mayavi.tools.camera import view, roll, yaw, pitch, move
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\mayavi\tools\camera.py", line 24, in <module>
from .engine_manager import get_engine
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\mayavi\tools\engine_manager.py", line 13, in <module>
from mayavi.core.registry import registry
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\mayavi\core\registry.py", line 16, in <module>
from mayavi.core.metadata import Metadata, import_symbol
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\mayavi\core\metadata.py", line 11, in <module>
from mayavi.core.pipeline_info import PipelineInfo
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\mayavi\core\pipeline_info.py", line 12, in <module>
from .utils import get_tvtk_dataset_name
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\mayavi\core\utils.py", line 2, in <module>
import vtk
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\vtk.py", line 32, in <module>
all_spec.loader.exec_module(all_m)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\vtkmodules\all.py", line 7, in <module>
from .vtkCommonCore import *
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\vtkmodules\vtkCommonCore.py", line 9, in <module>
from vtkCommonCorePython import *
ImportError: DLL load failed: The specified module could not be found.
I tried what @daltondm suggested there https://github.com/lambdaloop/anipose/issues/69 but with no luck. After this passage:
- pip install numpy==1.19
- conda uninstall mayavi
- pip install vtk==8.1.2
- pip install mayavi
The error now is this:
Traceback (most recent call last):
File "C:\Users\nini\Anaconda3\envs\dlc\lib\runpy.py", line 193, in _run_module_as_main
"__main__", mod_spec)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\runpy.py", line 85, in _run_code
exec(code, run_globals)
File "C:\Users\nini\Anaconda3\envs\dlc\Scripts\anipose.exe\__main__.py", line 7, in <module>
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\click\core.py", line 1128, in __call__
return self.main(*args, **kwargs)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\click\core.py", line 1053, in main
rv = self.invoke(ctx)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\click\core.py", line 1659, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\click\core.py", line 1395, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\click\core.py", line 754, in invoke
return __callback(*args, **kwargs)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\click\decorators.py", line 84, in new_func
return ctx.invoke(f, obj, *args, **kwargs)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\click\core.py", line 754, in invoke
return __callback(*args, **kwargs)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\anipose\anipose.py", line 257, in label_3d
from .label_videos_3d import label_videos_3d_all
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\anipose\label_videos_3d.py", line 16, in <module>
from matplotlib.pyplot import get_cmap
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\matplotlib\pyplot.py", line 2500, in <module>
switch_backend(rcParams["backend"])
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\matplotlib\__init__.py", line 621, in __getitem__
plt.switch_backend(rcsetup._auto_backend_sentinel)
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\matplotlib\pyplot.py", line 236, in switch_backend
current_framework = cbook._get_running_interactive_framework()
File "C:\Users\nini\Anaconda3\envs\dlc\lib\site-packages\matplotlib\cbook\__init__.py", line 69, in _get_running_interactive_framework
if wx and wx.GetApp():
AttributeError: module 'wx' has no attribute 'GetApp'
My environment has this modules:
# Name Version Build Channel
_tflow_select 2.2.0 eigen
absl-py 0.13.0 py37haa95532_0
anipose 1.0.1 pypi_0 pypi
aniposelib 0.4.3 pypi_0 pypi
apptools 5.1.0 pypi_0 pypi
astor 0.8.1 py37haa95532_0
astunparse 1.6.3 pypi_0 pypi
backcall 0.2.0 pypi_0 pypi
blas 1.0 mkl
brotli 1.0.9 pypi_0 pypi
ca-certificates 2021.9.30 haa95532_1
cached-property 1.5.2 py_0
cachetools 4.2.4 pypi_0 pypi
certifi 2021.10.8 py37haa95532_0
charset-normalizer 2.0.7 pypi_0 pypi
clang 5.0 pypi_0 pypi
click 8.0.3 pypi_0 pypi
colorama 0.4.4 pypi_0 pypi
configobj 5.0.6 pypi_0 pypi
coverage 5.5 py37h2bbff1b_2
cycler 0.10.0 pypi_0 pypi
cython 0.29.24 py37hd77b12b_0
dataclasses 0.8 pyh6d0b6a4_7
decorator 4.4.2 pypi_0 pypi
deeplabcut 2.2.0.2 pypi_0 pypi
envisage 6.0.1 pypi_0 pypi
ffmpeg 4.2.2 he774522_0
filterpy 1.4.5 pypi_0 pypi
flask 2.0.2 pypi_0 pypi
flask-compress 1.10.1 pypi_0 pypi
flask-ipban 1.1.5 pypi_0 pypi
flatbuffers 1.12 pypi_0 pypi
gast 0.4.0 pypi_0 pypi
google-auth 1.35.0 pypi_0 pypi
google-auth-oauthlib 0.4.6 pypi_0 pypi
google-pasta 0.2.0 pypi_0 pypi
grpcio 1.41.0 pypi_0 pypi
h5py 3.1.0 pypi_0 pypi
hdf5 1.10.6 h7ebc959_0
icc_rt 2019.0.0 h0cc432a_1
idna 3.3 pypi_0 pypi
imageio 2.9.0 pypi_0 pypi
imageio-ffmpeg 0.4.5 pypi_0 pypi
imgaug 0.4.0 pypi_0 pypi
importlib-metadata 4.8.1 py37haa95532_0
importlib-resources 5.2.2 pypi_0 pypi
intel-openmp 2021.3.0 haa95532_3372
ipython 7.28.0 pypi_0 pypi
itsdangerous 2.0.1 pypi_0 pypi
jedi 0.18.0 pypi_0 pypi
jinja2 3.0.2 pypi_0 pypi
joblib 1.1.0 pypi_0 pypi
keras 2.6.0 pypi_0 pypi
keras-applications 1.0.8 py_1
keras-preprocessing 1.1.2 pyhd3eb1b0_0
kiwisolver 1.3.2 pypi_0 pypi
libprotobuf 3.17.2 h23ce68f_1
llvmlite 0.37.0 pypi_0 pypi
markdown 3.3.4 py37haa95532_0
markupsafe 2.0.1 pypi_0 pypi
matplotlib 3.4.3 pypi_0 pypi
matplotlib-inline 0.1.3 pypi_0 pypi
mayavi 4.7.3 pypi_0 pypi
mkl 2021.3.0 haa95532_524
mkl-service 2.4.0 py37h2bbff1b_0
mkl_fft 1.3.0 py37h277e83a_2
mkl_random 1.2.2 py37hf11a4ad_0
mock 4.0.3 pyhd3eb1b0_0
moviepy 1.0.3 pypi_0 pypi
msgpack 1.0.2 pypi_0 pypi
msgpack-numpy 0.4.7.1 pypi_0 pypi
networkx 2.6.3 pypi_0 pypi
numba 0.54.1 pypi_0 pypi
numexpr 2.7.3 pypi_0 pypi
numpy 1.19.0 pypi_0 pypi
oauthlib 3.1.1 pypi_0 pypi
opencv-contrib-python 4.5.3.56 pypi_0 pypi
opencv-python 4.5.3.56 pypi_0 pypi
opencv-python-headless 4.5.3.56 pypi_0 pypi
openssl 1.1.1l h2bbff1b_0
opt-einsum 3.3.0 pypi_0 pypi
pandas 1.3.3 pypi_0 pypi
parso 0.8.2 pypi_0 pypi
patsy 0.5.2 pypi_0 pypi
pickleshare 0.7.5 pypi_0 pypi
pillow 8.3.2 pypi_0 pypi
pip 21.2.4 py37haa95532_0
proglog 0.1.9 pypi_0 pypi
prompt-toolkit 3.0.20 pypi_0 pypi
protobuf 3.17.2 py37hd77b12b_0
psutil 5.8.0 pypi_0 pypi
pyasn1 0.4.8 pypi_0 pypi
pyasn1-modules 0.2.8 pypi_0 pypi
pyface 7.3.0 pypi_0 pypi
pygments 2.10.0 pypi_0 pypi
pyparsing 2.4.7 pypi_0 pypi
pyreadline 2.1 py37_1
python 3.7.11 h6244533_0
python-dateutil 2.8.2 pypi_0 pypi
pytz 2021.3 pypi_0 pypi
pywavelets 1.1.1 pypi_0 pypi
pyyaml 5.4.1 pypi_0 pypi
pyzmq 22.3.0 pypi_0 pypi
requests 2.26.0 pypi_0 pypi
requests-oauthlib 1.3.0 pypi_0 pypi
rsa 4.7.2 pypi_0 pypi
ruamel-yaml 0.17.16 pypi_0 pypi
ruamel-yaml-clib 0.2.6 pypi_0 pypi
scikit-image 0.18.3 pypi_0 pypi
scikit-learn 1.0 pypi_0 pypi
scikit-video 1.1.11 pypi_0 pypi
scipy 1.7.1 py37hbe87c03_2
setuptools 58.0.4 py37haa95532_0
shapely 1.7.1 pypi_0 pypi
six 1.15.0 pypi_0 pypi
sqlite 3.36.0 h2bbff1b_0
statsmodels 0.13.0 pypi_0 pypi
tables 3.6.1 pypi_0 pypi
tabulate 0.8.9 pypi_0 pypi
tensorboard 2.6.0 pypi_0 pypi
tensorboard-data-server 0.6.1 pypi_0 pypi
tensorboard-plugin-wit 1.8.0 pypi_0 pypi
tensorflow 2.6.0 pypi_0 pypi
tensorflow-estimator 2.6.0 pypi_0 pypi
tensorpack 0.11 pypi_0 pypi
termcolor 1.1.0 py37haa95532_1
tf-slim 1.1.0 pypi_0 pypi
threadpoolctl 3.0.0 pypi_0 pypi
tifffile 2021.10.12 pypi_0 pypi
toml 0.10.2 pypi_0 pypi
tqdm 4.62.3 pypi_0 pypi
traitlets 5.1.0 pypi_0 pypi
traits 6.3.1 pypi_0 pypi
traitsui 7.2.1 pypi_0 pypi
typing-extensions 3.7.4.3 pypi_0 pypi
urllib3 1.26.7 pypi_0 pypi
vc 14.2 h21ff451_1
vs2015_runtime 14.27.29016 h5e58377_2
vtk 8.1.2 pypi_0 pypi
wcwidth 0.2.5 pypi_0 pypi
werkzeug 2.0.1 pyhd3eb1b0_0
wheel 0.37.0 pyhd3eb1b0_1
wincertstore 0.2 py37haa95532_2
wrapt 1.12.1 pypi_0 pypi
wxpython 4.1.1 pypi_0 pypi
zipp 3.6.0 pyhd3eb1b0_0
zlib 1.2.11 h62dcd97_4
Can anyone help? Thank you very much!
Issue Analytics
- State:
- Created 2 years ago
- Comments:6 (1 by maintainers)
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Already seen, I cited it in the explanation of the problem with the new errors that it generates…
Small update: I have tried all kinds of combinations and iterations of path variables in windows. Nothing seems to resolve the issue.
Also, opening ipython and using import vtk results in an DLL error for vtk, which makes me guess it is just not properly installed? But, then using pip install vtk results in python saying that it is already installed. Maddening