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anipose label-3d (ModuleNotFoundError: No module named 'vtkCommonCorePython')
See original GitHub issueHi,
I’ve been able to analyze, filter, calibrate and triangulate my data, but I’m unable to generate 3D labels and I’m running to following error:
(anipose) E:\Tiedostoja\Gradu\dlc_anipose\anipose_data>anipose label-3d
Traceback (most recent call last):
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\vtkmodules\vtkCo
mmonCore.py", line 5, in <module>
from .vtkCommonCorePython import *
ImportError: DLL load failed: The specified module could not be found.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "c:\users\roope\anaconda3\envs\anipose\lib\runpy.py", line 193, in _run_m
odule_as_main
"__main__", mod_spec)
File "c:\users\roope\anaconda3\envs\anipose\lib\runpy.py", line 85, in _run_co
de
exec(code, run_globals)
File "C:\Users\roope\anaconda3\envs\anipose\Scripts\anipose.exe\__main__.py",
line 7, in <module>
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\click\core.py",
line 1137, in __call__
return self.main(*args, **kwargs)
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\click\core.py",
line 1062, in main
rv = self.invoke(ctx)
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\click\core.py",
line 1668, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\click\core.py",
line 1404, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\click\core.py",
line 763, in invoke
return __callback(*args, **kwargs)
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\click\decorators
.py", line 84, in new_func
return ctx.invoke(f, obj, *args, **kwargs)
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\click\core.py",
line 763, in invoke
return __callback(*args, **kwargs)
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\anipose\anipose.
py", line 255, in label_3d
from .label_videos_3d import label_videos_3d_all
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\anipose\label_vi
deos_3d.py", line 3, in <module>
from mayavi import mlab
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\mayavi\mlab.py",
line 16, in <module>
from mayavi.tools.camera import view, roll, yaw, pitch, move
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\mayavi\tools\cam
era.py", line 24, in <module>
from .engine_manager import get_engine
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\mayavi\tools\eng
ine_manager.py", line 13, in <module>
from mayavi.core.registry import registry
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\mayavi\core\regi
stry.py", line 16, in <module>
from mayavi.core.metadata import Metadata, import_symbol
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\mayavi\core\meta
data.py", line 11, in <module>
from mayavi.core.pipeline_info import PipelineInfo
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\mayavi\core\pipe
line_info.py", line 12, in <module>
from .utils import get_tvtk_dataset_name
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\mayavi\core\util
s.py", line 2, in <module>
import vtk
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\vtk.py", line 32
, in <module>
all_spec.loader.exec_module(all_m)
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\vtkmodules\all.p
y", line 7, in <module>
from .vtkCommonCore import *
File "c:\users\roope\anaconda3\envs\anipose\lib\site-packages\vtkmodules\vtkCo
mmonCore.py", line 9, in <module>
from vtkCommonCorePython import *
ModuleNotFoundError: No module named 'vtkCommonCorePython'
Here is a list of installed packages in my env:
# Name Version Build Channe
_tflow_select 2.1.0 gpu
absl-py 0.12.0 py37haa95532_0
anipose 0.9.0 pypi_0 pypi
aniposelib 0.4.1 pypi_0 pypi
apptools 5.1.0 pyhd3eb1b0_0
astor 0.8.1 py37haa95532_0
backcall 0.2.0 pypi_0 pypi
bayesian-optimization 1.2.0 pypi_0 pypi
blas 1.0 mkl
ca-certificates 2021.4.13 haa95532_1
cached-property 1.5.2 py_0
certifi 2020.12.5 py37haa95532_0
chardet 4.0.0 pypi_0 pypi
click 8.0.1 pypi_0 pypi
colorama 0.4.4 pypi_0 pypi
configobj 5.0.6 py37haa95532_1
coverage 5.5 py37h2bbff1b_2
cudatoolkit 10.0.130 0
cudnn 7.6.5 cuda10.0_0
curl 7.71.1 h2a8f88b_1
cycler 0.10.0 pypi_0 pypi
cython 0.29.23 py37hd77b12b_0
decorator 4.4.2 pypi_0 pypi
deeplabcut 2.1.8.2 pypi_0 pypi
easydict 1.9 pypi_0 pypi
envisage 6.0.0 pyhd3eb1b0_0
expat 2.4.1 h6c2663c_2
ffmpeg 4.2.2 he774522_0
filterpy 1.4.5 pypi_0 pypi
freetype 2.10.4 hd328e21_0
future 0.18.2 py37_1
gast 0.4.0 py_0
grpcio 1.36.1 py37hc60d5dd_1
h5py 2.10.0 pypi_0 pypi
hdf4 4.2.13 h712560f_2
hdf5 1.10.6 h7ebc959_0
icc_rt 2019.0.0 h0cc432a_1
icu 58.2 ha925a31_3
idna 2.10 pypi_0 pypi
imageio 2.9.0 pypi_0 pypi
imageio-ffmpeg 0.4.4 pypi_0 pypi
imgaug 0.4.0 pypi_0 pypi
importlib-metadata 3.10.0 py37haa95532_0
importlib-resources 5.1.4 pypi_0 pypi
intel-openmp 2021.2.0 pypi_0 pypi
ipython 7.23.1 pypi_0 pypi
ipython-genutils 0.2.0 pypi_0 pypi
jedi 0.18.0 pypi_0 pypi
joblib 1.0.1 pypi_0 pypi
jpeg 9b hb83a4c4_2
jsoncpp 1.9.4 h59b6b97_2
keras-applications 1.0.8 py_1
keras-preprocessing 1.1.2 pyhd3eb1b0_0
kiwisolver 1.3.1 pypi_0 pypi
krb5 1.18.2 hc04afaa_0
libcurl 7.71.1 h2a8f88b_1
libiconv 1.15 h1df5818_7
libnetcdf 4.6.1 hf59b723_3
libpng 1.6.37 h2a8f88b_0
libprotobuf 3.14.0 h23ce68f_0
libssh2 1.9.0 h7a1dbc1_1
libtiff 4.1.0 h56a325e_0
libxml2 2.9.10 hb89e7f3_3
llvmlite 0.33.0 pypi_0 pypi
lz4-c 1.8.1.2 h2fa13f4_0
markdown 3.3.4 py37haa95532_0
matplotlib 3.0.3 pypi_0 pypi
matplotlib-inline 0.1.2 pypi_0 pypi
mayavi 4.7.1 py37h11817fe_2
mkl 2021.2.0 haa95532_296
mkl-service 2.3.0 py37h2bbff1b_1
mkl_fft 1.3.0 py37h277e83a_2
mkl_random 1.2.1 py37hf11a4ad_2
mock 4.0.3 pyhd3eb1b0_0
moviepy 1.0.1 pypi_0 pypi
msgpack 1.0.2 pypi_0 pypi
msgpack-numpy 0.4.7.1 pypi_0 pypi
networkx 2.5.1 pypi_0 pypi
numba 0.50.1 pypi_0 pypi
numexpr 2.7.3 pypi_0 pypi
numpy 1.16.4 pypi_0 pypi
opencv-contrib-python 3.4.14.51 pypi_0 pypi
opencv-python 3.4.14.51 pypi_0 pypi
opencv-python-headless 3.4.9.33 pypi_0 pypi
openssl 1.1.1k h2bbff1b_0
pandas 1.1.5 pypi_0 pypi
parso 0.8.2 pypi_0 pypi
patsy 0.5.1 pypi_0 pypi
pickleshare 0.7.5 pypi_0 pypi
pillow 8.2.0 pypi_0 pypi
pip 21.1.1 py37haa95532_0
proglog 0.1.9 pypi_0 pypi
prompt-toolkit 3.0.18 pypi_0 pypi
protobuf 3.14.0 py37hd77b12b_1
psutil 5.8.0 pypi_0 pypi
pyface 7.3.0 py37haa95532_1
pygments 2.9.0 pyhd3eb1b0_0
pyparsing 2.4.7 pypi_0 pypi
pyqt 5.9.2 py37h6538335_2
pyreadline 2.1 py37_1
python 3.7.10 h6244533_0
python-dateutil 2.8.1 pypi_0 pypi
pytz 2021.1 pypi_0 pypi
pywavelets 1.1.1 pypi_0 pypi
pyyaml 5.4.1 pypi_0 pypi
pyzmq 22.1.0 pypi_0 pypi
qt 5.9.7 vc14h73c81de_0
requests 2.25.1 pypi_0 pypi
ruamel-yaml 0.17.4 pypi_0 pypi
ruamel-yaml-clib 0.2.2 pypi_0 pypi
scikit-image 0.17.2 pypi_0 pypi
scikit-learn 0.24.2 pypi_0 pypi
scikit-video 1.1.11 pypi_0 pypi
scipy 1.5.4 pypi_0 pypi
setuptools 52.0.0 py37haa95532_0
shapely 1.7.1 pypi_0 pypi
sip 4.19.8 py37h6538335_0
six 1.15.0 py37haa95532_0
sqlite 3.35.4 h2bbff1b_0
statsmodels 0.12.2 pypi_0 pypi
tables 3.6.1 pypi_0 pypi
tabulate 0.8.9 pypi_0 pypi
tbb 2021.2.0 h59b6b97_0
tensorboard 1.13.1 py37h33f27b4_0
tensorflow 1.13.1 gpu_py37h83e5d6a_0
tensorflow-base 1.13.1 gpu_py37h871c8ca_0
tensorflow-estimator 1.13.0 py_0
tensorflow-gpu 1.13.1 h0d30ee6_0
tensorpack 0.9.8 pypi_0 pypi
termcolor 1.1.0 py37haa95532_1
threadpoolctl 2.1.0 pypi_0 pypi
tifffile 2021.4.8 pypi_0 pypi
toml 0.10.2 pypi_0 pypi
tqdm 4.61.0 pypi_0 pypi
traitlets 5.0.5 pypi_0 pypi
traits 6.2.0 py37h2bbff1b_0
traitsui 7.1.1 pyhd3eb1b0_0
typing_extensions 3.7.4.3 pyha847dfd_0
urllib3 1.26.5 pypi_0 pypi
vc 14.2 h21ff451_1
vs2015_runtime 14.27.29016 h5e58377_2
vtk 8.2.0 py37h1e53df8_200
wcwidth 0.2.5 pypi_0 pypi
werkzeug 1.0.1 pyhd3eb1b0_0
wheel 0.36.2 pyhd3eb1b0_0
wincertstore 0.2 py37_0
wxpython 4.1.1 pypi_0 pypi
xz 5.2.5 h62dcd97_0
zipp 3.4.1 pyhd3eb1b0_0
zlib 1.2.11 h62dcd97_4
zstd 1.3.7 h508b16e_0
I haven’t been able to figure this out by myself so any help would be greatly appreciated!
Issue Analytics
- State:
- Created 2 years ago
- Comments:5
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