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viewing the metadata of tif file

See original GitHub issue

Hi @marcomusy,

I tried to visualize a 3D volume in vedo. After loading the .tif file

from vedo import *

vol = Volume('3dtif.tif') #.printHistogram(logscale=True)
print(vol)
show(vol, axes=1, viewup='z')

I found only a blank volume. So I want to check the contents of the .tif file and I am not sure how to view the metadata in the tif file. Could you please help me with this?

3dtif.tif

Issue Analytics

State:
Created 2 years ago
Comments:9 (5 by maintainers)

Top GitHub Comments

2reactions

DeepaMahmcommented, Jan 12, 2022

Hi @marcomusy , I couldn’t get this working with vedo cell.id.tif --slicer. I’ll give it a try in other python versions.

this works

vol = Volume('cell.id.tif')

plt = SlicerPlotter(
    vol,
    bg='white', bg2='lightblue',
    cmaps=("gist_ncar_r","jet","Spectral_r","hot_r","bone_r"),
    useSlider3D=False,
   )

I am really happy to share with you our recent work which uses vedo for visualization of simulation results (full text available here https://www.frontiersin.org/articles/10.3389/fnetp.2021.802881/full).

Wishing you a very happy New Year 😃

0reactions

marcomusycommented, Jan 12, 2022

Happy new Year! Thanks for the link I will definitely add it to the list of publications leveraging the library! Thanks also for all useful feedback which helped to improve the software significantly!